View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8142_low_3 (Length: 452)
Name: NF8142_low_3
Description: NF8142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8142_low_3 |
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| [»] scaffold0062 (4 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 395; Significance: 0; HSPs: 4)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 15582 - 16016
Alignment:
| Q |
18 |
gaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15582 |
gaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
15681 |
T |
|
| Q |
118 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
15682 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgt |
15781 |
T |
|
| Q |
218 |
taaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaac |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
15782 |
taaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaac |
15881 |
T |
|
| Q |
318 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataaccc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
15882 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactc |
15981 |
T |
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| Q |
418 |
aacttaagaatgataattatctacgcatcaagatc |
452 |
Q |
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| T |
15982 |
aacttaagaatgataattatctacgcatcaagatc |
16016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 25750 - 26184
Alignment:
| Q |
18 |
gaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
117 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25750 |
gaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
25849 |
T |
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| Q |
118 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
25850 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgt |
25949 |
T |
|
| Q |
218 |
taaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaac |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
25950 |
taaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaac |
26049 |
T |
|
| Q |
318 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataaccc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26050 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactc |
26149 |
T |
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| Q |
418 |
aacttaagaatgataattatctacgcatcaagatc |
452 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
26150 |
aacttaagaatgataattatctacgcatcaagatc |
26184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 35916 - 36350
Alignment:
| Q |
18 |
gaaataattaaaaccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35916 |
gaaataatcaaaaccaatatctcagaattccacttcattttgggatttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaa |
36015 |
T |
|
| Q |
118 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
36016 |
cttggaatactagagcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgt |
36115 |
T |
|
| Q |
218 |
taaaactccattcaatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaac |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
36116 |
taaaactccattcaatcctgttgaggaaactatctggattacgcgggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaac |
36215 |
T |
|
| Q |
318 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataaccc |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
36216 |
ataattgatggcattgacattaattatcttaacgtcttccatactacaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactc |
36315 |
T |
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| Q |
418 |
aacttaagaatgataattatctacgcatcaagatc |
452 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36316 |
aacttaagaatgataattatctacgcatcaagatc |
36350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 344
Target Start/End: Original strand, 5267 - 5580
Alignment:
| Q |
31 |
ccaatatctcagaattccacttcattttggggtttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactag |
130 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| | ||||||||||| | | |||| | |||||||||||||||||| ||||||||| | |
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| T |
5267 |
ccaatatctcagaattccacttcattttgggctttgcaagcgaggagtatgatgataaaaaaagaggcacaggagttttcaaaacaacttggaacgttga |
5366 |
T |
|
| Q |
131 |
agcattcggtccagaagcagtgagaaatttgaagggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattc |
230 |
Q |
| |
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| ||||||||||||| |||| | ||||||| ||||||| ||||||||||||| |||||||| |||||||| |||| | |||||||||||| |
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|
| T |
5367 |
attcttcggtccagaagatgtgaaacggttgaaggaaaataataaaaatgtgaaggtggtaataagctttggaggttgtgac---gaaaaaactccattc |
5463 |
T |
|
| Q |
231 |
aatcctgttgaggaaaatatctggatttcgcaggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggc---aacataattgatg |
327 |
Q |
| |
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||||||| |||||| ||||| |||| | | |||||| |||||||||||| |||||||| || || ||||||||||| |||| | |||||||||| |
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| T |
5464 |
aatcctgctgaggataatatatggacggagaaagctgtggcttcactcaaagtgatcatcctaagattcaaggatcaaagtggcagaagtataattgatg |
5563 |
T |
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| Q |
328 |
gcattgacattaattat |
344 |
Q |
| |
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| |||||||| |||||| |
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| T |
5564 |
gtattgacatcaattat |
5580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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