View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8142_low_9 (Length: 298)

Name: NF8142_low_9
Description: NF8142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8142_low_9
NF8142_low_9
[»] chr3 (20 HSPs)
chr3 (72-223)||(30810862-30811013)
chr3 (75-223)||(50392615-50392761)
chr3 (72-204)||(45150752-45150884)
chr3 (75-223)||(28182527-28182676)
chr3 (72-204)||(53687189-53687321)
chr3 (72-204)||(11263845-11263977)
chr3 (72-197)||(42274671-42274796)
chr3 (72-198)||(39251630-39251757)
chr3 (73-198)||(48181224-48181350)
chr3 (72-198)||(44610646-44610769)
chr3 (84-223)||(45488901-45489045)
chr3 (72-198)||(51229881-51230007)
chr3 (72-183)||(42074546-42074653)
chr3 (72-223)||(48254296-48254448)
chr3 (72-148)||(51407618-51407694)
chr3 (72-198)||(28883844-28883969)
chr3 (72-185)||(44328806-44328919)
chr3 (72-129)||(33025685-33025742)
chr3 (154-198)||(33330110-33330154)
chr3 (132-192)||(40237482-40237541)
[»] chr8 (14 HSPs)
chr8 (72-223)||(2025667-2025818)
chr8 (72-198)||(35802162-35802288)
chr8 (72-223)||(22936363-22936514)
chr8 (73-204)||(35164193-35164324)
chr8 (72-223)||(13015833-13015983)
chr8 (72-223)||(36821419-36821571)
chr8 (72-204)||(45276215-45276347)
chr8 (80-198)||(3590233-3590349)
chr8 (72-192)||(8416816-8416937)
chr8 (72-197)||(7637384-7637507)
chr8 (85-206)||(37683948-37684068)
chr8 (72-158)||(33165946-33166031)
chr8 (160-213)||(924267-924320)
chr8 (154-211)||(38023160-38023217)
[»] chr5 (14 HSPs)
chr5 (72-223)||(10900286-10900436)
chr5 (72-223)||(40979573-40979721)
chr5 (72-213)||(41742024-41742166)
chr5 (72-198)||(8958321-8958447)
chr5 (72-222)||(11018223-11018373)
chr5 (72-204)||(41039948-41040080)
chr5 (72-204)||(31905584-31905718)
chr5 (80-198)||(33387518-33387635)
chr5 (72-164)||(25256667-25256758)
chr5 (72-164)||(25320458-25320549)
chr5 (110-183)||(2526466-2526538)
chr5 (72-148)||(53535-53611)
chr5 (81-163)||(33082763-33082844)
chr5 (72-118)||(19356655-19356702)
[»] chr1 (23 HSPs)
chr1 (72-215)||(41512298-41512441)
chr1 (72-221)||(42137496-42137645)
chr1 (72-223)||(46033470-46033621)
chr1 (72-204)||(44740299-44740431)
chr1 (72-223)||(47655680-47655832)
chr1 (72-162)||(24075676-24075766)
chr1 (72-204)||(50030982-50031116)
chr1 (78-223)||(13509733-13509879)
chr1 (72-198)||(1762372-1762496)
chr1 (72-150)||(27416718-27416796)
chr1 (75-207)||(49430789-49430921)
chr1 (83-198)||(4485002-4485117)
chr1 (96-198)||(6706308-6706410)
chr1 (80-213)||(45179493-45179625)
chr1 (86-213)||(11050903-11051030)
chr1 (72-223)||(27067289-27067439)
chr1 (91-186)||(11829247-11829341)
chr1 (84-205)||(20473615-20473736)
chr1 (84-205)||(20557817-20557938)
chr1 (72-167)||(31100317-31100411)
chr1 (72-131)||(7385369-7385429)
chr1 (84-148)||(20364595-20364659)
chr1 (84-148)||(20546252-20546316)
[»] chr4 (18 HSPs)
chr4 (72-223)||(39732964-39733115)
chr4 (72-223)||(50523664-50523815)
chr4 (72-204)||(53663447-53663579)
chr4 (72-204)||(22606171-22606304)
chr4 (72-204)||(48407106-48407238)
chr4 (74-207)||(49723936-49724069)
chr4 (72-204)||(45105960-45106092)
chr4 (120-215)||(5937694-5937789)
chr4 (72-223)||(30418186-30418338)
chr4 (72-204)||(38767945-38768077)
chr4 (72-191)||(8510312-8510430)
chr4 (72-223)||(28963661-28963813)
chr4 (80-198)||(16202916-16203033)
chr4 (72-204)||(53403928-53404055)
chr4 (72-223)||(29385837-29385981)
chr4 (72-186)||(51677256-51677365)
chr4 (91-192)||(28911752-28911852)
chr4 (72-148)||(26457265-26457341)
[»] chr2 (12 HSPs)
chr2 (72-223)||(44002801-44002952)
chr2 (73-205)||(37640572-37640704)
chr2 (72-223)||(43342069-43342221)
chr2 (72-204)||(7473672-7473804)
chr2 (84-180)||(37996883-37996979)
chr2 (130-223)||(19860454-19860547)
chr2 (72-148)||(35458052-35458129)
chr2 (86-185)||(12015687-12015785)
chr2 (72-198)||(43695117-43695242)
chr2 (88-198)||(32497028-32497138)
chr2 (72-117)||(17480968-17481014)
chr2 (135-223)||(17481005-17481093)
[»] chr7 (18 HSPs)
chr7 (72-204)||(26826526-26826658)
chr7 (84-213)||(47158026-47158153)
chr7 (72-223)||(25472557-25472709)
chr7 (73-197)||(43664635-43664758)
chr7 (72-204)||(26827579-26827707)
chr7 (72-223)||(30139621-30139773)
chr7 (72-223)||(30825344-30825494)
chr7 (72-197)||(15000022-15000147)
chr7 (72-198)||(25970587-25970713)
chr7 (78-197)||(1999990-2000107)
chr7 (91-198)||(47085506-47085612)
chr7 (94-198)||(298478-298581)
chr7 (72-221)||(25191657-25191806)
chr7 (72-145)||(32450905-32450977)
chr7 (72-148)||(45202625-45202700)
chr7 (136-213)||(11341647-11341723)
chr7 (95-223)||(26169764-26169891)
chr7 (135-192)||(39857253-39857309)
[»] scaffold0097 (1 HSPs)
scaffold0097 (72-204)||(32874-33006)
[»] scaffold0068 (1 HSPs)
scaffold0068 (72-204)||(37849-37982)
[»] scaffold0069 (1 HSPs)
scaffold0069 (72-198)||(16965-17091)
[»] scaffold0006 (1 HSPs)
scaffold0006 (72-198)||(91690-91816)
[»] chr6 (6 HSPs)
chr6 (72-223)||(27825153-27825304)
chr6 (72-166)||(20838345-20838439)
chr6 (110-183)||(4146992-4147064)
chr6 (96-204)||(10683333-10683441)
chr6 (91-177)||(30134316-30134401)
chr6 (72-121)||(365751-365801)
[»] scaffold0808 (1 HSPs)
scaffold0808 (96-192)||(4266-4362)
[»] scaffold0184 (2 HSPs)
scaffold0184 (167-223)||(9550-9606)
scaffold0184 (72-109)||(9601-9638)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 30810862 - 30811013
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30810862 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggtcatg 30810961  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||    
T  30810962 agttaccaagttttggattttcctttacggtgtttccattcaaaattactgt 30811013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 50392761 - 50392615
Alignment:
Q  75 ttctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagt 174  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  50392761 ttctccttctttttgttttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggt-atgagt 50392663  T
Q  175 taccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    |||||||||||| |||||||||||  ||  ||||||||||| |||||||    
T  50392662 taccaagttttggattttcctttaccgt-attcctttcaaatttactgt 50392615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 45150752 - 45150884
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||  ||||| ||||||||||||    
T  45150752 caattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttaatgaaccaaattagcccccgaaaaatgtttatggtcatg 45150851  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    | ||||||| |||||||||||||||||||||||    
T  45150852 aattaccaaattttgaattttcctttatggtgt 45150884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 28182527 - 28182676
Alignment:
Q  75 ttctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagt 174  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  |||||||||||||||||||||    
T  28182527 ttctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaagacttaacgaaccaaattagcccccgaaaaatatttatggtcatgagt 28182626  T
Q  175 tacc-aagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    | || || ||||||||||||||||| ||| | ||| |||| | |||||||    
T  28182627 tgccaaatttttgaattttcctttacggtatctccattcagatttactgt 28182676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 53687321 - 53687189
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||| |||||||||||| |||||||||||| ||||||| ||| |||||||||||| ||||||||||||||||| ||||| |||||| |||||    
T  53687321 caattctccttcattttgctttgtaattaatttgatgagccaaattaaataagaaaacttaaccaaccaaattagcctccaaaaaatgtttatgatcatg 53687222  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||| ||||||||||||||||||||| |||||    
T  53687221 agttatcaagttttgaattttcctttacggtgt 53687189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 11263845 - 11263977
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||  |  ||||| ||||||||||||    
T  11263845 caattctccttctttttgctttgtaattaatttgatgaacaaaattcaatcagaaaacttaatgaaccaaattagccctcgaaaaatgtttatggtcatg 11263944  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||| ||| ||||||||||||||||| |||||    
T  11263945 agttatcaaattttgaattttcctttacggtgt 11263977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 42274671 - 42274796
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||  ||||| ||||| ||||||    
T  42274671 caattttccttctttttcctttgtaattaatttgatgaaccaaatttgatcagaaaacttatcgaaccaaattagcccccgaaaaatgtttatagtcatg 42274770  T
Q  172 agttaccaagttttgaattttccttt 197  Q
    ||||||||| ||||||||||||||||    
T  42274771 agttaccaaattttgaattttccttt 42274796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 39251630 - 39251757
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||| |||||||||||    
T  39251630 caattctccttctttttggttggtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcat 39251729  T
Q  171 gagttaccaagttttgaattttccttta 198  Q
    || ||||||| ||||||||||| |||||    
T  39251730 gacttaccaaattttgaatttttcttta 39251757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 48181224 - 48181350
Alignment:
Q  73 aattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctcc-ataaaatatttatggtcatg 171  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| || | ||||| ||||||||||||    
T  48181224 aattcttcttctttttgctttgtaattaatttcatgaaccaaatttaatcagaaaacttaacgagccaaattagcccccgaaaaaatgtttatggtcatg 48181323  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    ||||||||| ||||  |||||||||||    
T  48181324 agttaccaaattttagattttccttta 48181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 44610769 - 44610646
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||| |||||||||||||||||||| |||    
T  44610769 caatgctccttcttttcgatttgtatttaatttgatgaaccaaatttaatca-aaaatctaacgaatcaaattag-ctccataaaatatttatggt-atg 44610673  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    ||||||||||||||||||||| |||||    
T  44610672 agttaccaagttttgaatttttcttta 44610646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 45489045 - 45488901
Alignment:
Q  84 tttttgctttgtatttaatttgat-----gaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacc 178  Q
    ||||||||||||||||||||||||     |||||||||||||  |||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||    
T  45489045 tttttgctttgtatttaatttgatttgatgaaccaaatttaactagaaaatttaacgaaccaaattaacctccagaaaatatttatggttatgagttacc 45488946  T
Q  179 aagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    |||||||| ||||| ||||| || |||||| |||| | |||||||    
T  45488945 aagttttggatttttctttacggcgtttccattcagatttactgt 45488901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 51229881 - 51230007
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||  |||||||||||| ||  ||||  ||||| ||||||    
T  51229881 caattctccttctttttgctttgtaattaatttgatgaatcaaatttaataagaaaacttaaccgaccaaattagcccccgaaaaaagtttatcgtcatg 51229980  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    ||||| ||| ||||| |||||||||||    
T  51229981 agttatcaaattttggattttccttta 51230007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 72 - 183
Target Start/End: Original strand, 42074546 - 42074653
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |    ||||| ||  ||||| ||||||||||||    
T  42074546 caattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaacttaaccaagc----tagcccccgaaaaatgtttatggtcatg 42074641  T
Q  172 agttaccaagtt 183  Q
    ||||||||||||    
T  42074642 agttaccaagtt 42074653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 48254448 - 48254296
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||  |||||||||     ||||| |||||||||||    
T  48254448 caattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaaggaattaaattagcccttgaaaaatgtttatggtcat 48254349  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    || ||| ||| ||||||||||| ||||| |||||  || |||||| |||||||    
T  48254348 gacttatcaaattttgaatttttctttacggtgtccccattcaaatttactgt 48254296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 51407618 - 51407694
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 148  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  51407618 caattctccttctttttgctttgtaattaatttgatgaaccgaatttaatcagaaaatttaacgaaacaaattagcc 51407694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 28883844 - 28883969
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||  |||||||||||||| ||| |||| ||||||||| || | ||||||||||||||||||| ||| ||||||||||||||||      
T  28883844 caattctccttctttttagtttgtatttaatttaatgtaccacatttaatcaaaatatttaacgaaccaaattagcc-ccaaaaaatatttatggtcaac 28883942  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    | ||||||||||||  ||||| |||||    
T  28883943 aattaccaagttttagatttttcttta 28883969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 44328806 - 44328919
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaat-cagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||| ||||||||| ||||||||||||||||| |||||||||||||  | ||||  |||||||||||||||||| | | ||||||||||||||||     
T  44328806 caattctcattctttttggtttgtatttaatttgataaaccaaatttaataaaaaaaaagtaacgaaccaaattagcc-caaaaaaatatttatggtcag 44328904  T
Q  171 gagttaccaagtttt 185  Q
    |||||||||||||||    
T  44328905 gagttaccaagtttt 44328919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 33025742 - 33025685
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaac 129  Q
    ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  33025742 caattctccttctttttgctttgtaattaattcgatgaaccaaatttaatcagaaaac 33025685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 33330154 - 33330110
Alignment:
Q  154 aaaatatttatggtcatgagttaccaagttttgaattttccttta 198  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||    
T  33330154 aaaatatttatggtcatgagttaccaagttttggatttttcttta 33330110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 40237482 - 40237541
Alignment:
Q  132 aacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaatttt 192  Q
    ||||||||||||||||| ||||||||||||||||   |||||||||||| |||||| ||||    
T  40237482 aacgaaccaaattagcc-ccataaaatatttatgaatatgagttaccaaattttgagtttt 40237541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 2025667 - 2025818
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||    
T  2025667 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcataaaacttaacgaactaaattagcccccataaaatatttgtggtcatg 2025766  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||||||||| ||||||||||| |||||||| ||||||| |||||||    
T  2025767 agttaccaagttttggattttcctttacggtgtttcatttcaaatttactgt 2025818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 35802288 - 35802162
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||||||| || ||||||||||||||  ||||||||||||||||||||| ||||||||||||| ||  ||||| ||||||||||||    
T  35802288 caattctccttctttttgctttataattaatttgatgaacacaatttaatcagaaaacttaacaaaccaaattagcccccgaaaaatgtttatggtcatg 35802189  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    ||||||||| |||||||||||||||||    
T  35802188 agttaccaaattttgaattttccttta 35802162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 22936514 - 22936363
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||| |    
T  22936514 caattctccttctttttgttttgtaatttaatttgatgaaccaaatttaattagaaaagttaacgaaccaaattagccccca-aaaatatttatggtcgt 22936416  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    || ||||||| ||||||||||| ||||| |||||  || |||||| |||||||    
T  22936415 gacttaccaaattttgaatttttctttacggtgtccccattcaaatttactgt 22936363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 73 - 204
Target Start/End: Complemental strand, 35164324 - 35164193
Alignment:
Q  73 aattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatga 172  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||   |||| |||||||||||||    
T  35164324 aattctccttctttttgttttgtaattagtttgatgaaccaaatttaatcagaaaacttaaccaaccaaattagcctccgataaatgtttatggtcatga 35164225  T
Q  173 gttaccaagttttgaattttcctttatggtgt 204  Q
    |||||||| ||||| |||||| |||| |||||    
T  35164224 gttaccaaattttggattttcttttacggtgt 35164193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 13015833 - 13015983
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| |||||||| | | | |||||||||||||||| |    
T  13015833 caattctctttctttttggtttgtatttaatttgatgaatcaaatttaatcaaaaaatttaacgaatcaaattag-cacaaaaaaatatttatggtcaag 13015931  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||||||||||||||| ||||| ||| ||||| |||| | |||||||    
T  13015932 agttaccaagttttgaatttttctttacggtttttccgttcacatttactgt 13015983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 36821571 - 36821419
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaa-cttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||| ||||||||||||| || |||||||||||||||||||||||||| |||| |||| ||||||||||||||| ||  |||||||| ||||| ||    
T  36821571 caattctcattctttttgctttctaattaatttgatgaaccaaatttaatcaaaaaaacttagcgaaccaaattagcccccgaaaaatattaatggttat 36821472  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    |||||||||||||||| |||||||| || ||||| ||| |||| | |||||||    
T  36821471 gagttaccaagttttggattttcctctacggtgtctccattcagatttactgt 36821419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 45276347 - 45276215
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| ||||| |||| ||||||    
T  45276347 caattctcctactttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatgttta-ggtcat 45276249  T
Q  171 gagttaccaagttttgaattttcctttatggtgt 204  Q
    || ||||| | ||||||||||| ||||| |||||    
T  45276248 gacttaccgaattttgaatttttctttacggtgt 45276215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 3590233 - 3590349
Alignment:
Q  80 cttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacca 179  Q
    |||||||||  ||||||||||||||||||||||||||||||| | |||| ||||||||| ||||||||||| | ||||||||||||||||||||||||||    
T  3590233 cttctttttagtttgtatttaatttgatgaaccaaatttaataaaaaaa-ttaacgaactaaattagcctc-agaaaatatttatggtcatgagttacca 3590330  T
Q  180 agttttgaattttccttta 198  Q
    ||||||| ||||| |||||    
T  3590331 agttttggatttttcttta 3590349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 72 - 192
Target Start/End: Original strand, 8416816 - 8416937
Alignment:
Q  72 caattctccttctttttgctttgtatttaatt-tgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||| |||||||||||||||||||| |||| | |||||||||||| ||||| ||||||||| |||||||||||||||  ||  ||||| |||||||||||    
T  8416816 caatactccttctttttgctttgtaattaaatatgatgaaccaaaattaattagaaaacttcacgaaccaaattagcacccgaaaaatgtttatggtcat 8416915  T
Q  171 gagttaccaagttttgaatttt 192  Q
    || ||||||| |||||||||||    
T  8416916 gacttaccaaattttgaatttt 8416937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 7637384 - 7637507
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||| ||||||||||||||||||||||||||  |||||||| ||  ||| |||| | |||||||||||| ||| ||||||||||||||||||    
T  7637384 caattctccttcattttgctttgtatttaatttgatgaaataaatttaaacaataaatttaatg-accaaattagcc-ccaaaaaatatttatggtcatg 7637481  T
Q  172 agttaccaagttttgaattttccttt 197  Q
    || |||||| ||||  ||||||||||    
T  7637482 agctaccaaattttagattttccttt 7637507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 37684068 - 37683948
Alignment:
Q  85 ttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttt 184  Q
    ||||||||||||||| |||||||||||||||||| |||  |||| || |||||||||||||||| | |||||||||| ||| |||||| | |||||| ||    
T  37684068 ttttgctttgtatttgatttgatgaaccaaatttgatctaaaaatttgacgaaccaaattagcc-ctataaaatattaatgatcatgattcaccaagctt 37683970  T
Q  185 tgaattttcctttatggtgttt 206  Q
    ||| |||||| ||| |||||||    
T  37683969 tgagttttccattaaggtgttt 37683948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 72 - 158
Target Start/End: Original strand, 33165946 - 33166031
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaat 158  Q
    ||||||||||| ||| || |||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||| |||||||||    
T  33165946 caattctccttttttatggtttgtatttaatttgaggaaacaaatttaatcaaaaaatttaacgaaccaaattagcc-ccataaaat 33166031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 924267 - 924320
Alignment:
Q  160 tttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttca 213  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  924267 tttatggtcatgagttactaagttttgaattttcctttgtggtgtttccgttca 924320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 38023160 - 38023217
Alignment:
Q  154 aaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttccttt 211  Q
    ||||||||||| ||||||||||||||||||||  |||||| |||| | ||||||||||    
T  38023160 aaaatatttattgtcatgagttaccaagttttcgattttcttttacgatgtttccttt 38023217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 10900286 - 10900436
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  10900286 caattctctttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc-ccataaaagatttatggtcatg 10900384  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||||||||| |||||||||||  ||||||||||||||| |||||||    
T  10900385 agttaccaagttttggattttcctttacagtgtttcctttcaaatttactgt 10900436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 40979573 - 40979721
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||      
T  40979573 caattctccttctttttgccttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaatta-cccccataaaatatttatggtca-- 40979669  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    | ||||||||||||| ||||||||||| |||||||||||||||| |||||||    
T  40979670 aattaccaagttttggattttcctttacggtgtttcctttcaaatttactgt 40979721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 72 - 213
Target Start/End: Complemental strand, 41742166 - 41742024
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| |||||||||||||||||    
T  41742166 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatatttatggtcat 41742067  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttca 213  Q
    || ||||||| |||| |||||| ||||| ||||| ||| ||||    
T  41742066 gacttaccaaattttaaatttttctttacggtgtctccattca 41742024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 198
Target Start/End: Complemental strand, 8958447 - 8958321
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||| ||||||||||||    
T  8958447 caattctcattctttttgctttgtaattaatttgatgaaccaaatttaatcaggaaacttaaccaaccaaattaacccccataaaatgtttatggtcatg 8958348  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    | |||||| |||||| |||||||||||    
T  8958347 aattaccatgttttggattttccttta 8958321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 11018373 - 11018223
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||| ||||| ||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||| |  |||||||||||||||||||    
T  11018373 caattccccttccttttgctttctaattaatttgatgaaccaaatttaatcaaaaaacttagcgaaccaaattagcccctgtaaaatatttatggtcatg 11018274  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactg 222  Q
    || |||||||||||| ||||||||||| |||||  || |||||| ||||||    
T  11018273 agctaccaagttttggattttcctttacggtgtccccattcaaatttactg 11018223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 41040080 - 41039948
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| | || |||||||||| ||  ||||| ||||||||||||    
T  41040080 caattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagcaaatcaaattagcccccgaaaaatgtttatggtcatg 41039981  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| ||||||||||||||||| |||||    
T  41039980 agttaccaaattttgaattttcctttacggtgt 41039948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 31905584 - 31905718
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||| |||||||||||||||||    
T  31905584 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcgcccaaaaaatatttatggtcat 31905683  T
Q  171 -gagttaccaagttttgaattttcctttatggtgt 204  Q
     || |||| || ||||||||||| ||||| |||||    
T  31905684 agacttacaaaattttgaatttttctttacggtgt 31905718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 33387635 - 33387518
Alignment:
Q  80 cttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacca 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||| || |||||||||||||||||||||||| |    
T  33387635 cttctttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcct-cagaaaatatttatggtcatgagttacta 33387537  T
Q  180 agttttgaattttccttta 198  Q
    ||||||| ||||| |||||    
T  33387536 agttttggatttttcttta 33387518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 25256758 - 25256667
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttat 164  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||||    
T  25256758 caattctccttttttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcct-cagaaaatatttat 25256667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 25320549 - 25320458
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttat 164  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||||    
T  25320549 caattctccttttttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaatataacgaaccaaattagcct-cagaaaatatttat 25320458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 2526466 - 2526538
Alignment:
Q  110 accaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 183  Q
    |||||||||||||| |||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  2526466 accaaatttaatcaaaaaatttaacgaaccaaattagcc-ccataaaatatttacggacatgagttaccaagtt 2526538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 53611 - 53535
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 148  Q
    |||||||| || |||||||||| || || |||||||||||| |||||||| ||||||||||||||||||||||||||    
T  53611 caattctcattttttttgctttttaattgatttgatgaaccgaatttaattagaaaacttaacgaaccaaattagcc 53535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 33082844 - 33082763
Alignment:
Q  81 ttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatattta 163  Q
    ||||||||| |||||||||||||| |||||||||||||||||  |||| ||||||||| ||| |||||| |||||||||||||    
T  33082844 ttctttttggtttgtatttaatttaatgaaccaaatttaatcgaaaaaattaacgaactaaactagcct-cataaaatattta 33082763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 19356655 - 19356702
Alignment:
Q  72 caattctccttctttttgctttgt-atttaatttgatgaaccaaattt 118  Q
    ||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  19356655 caattctccttctttttcctttgtaatttaatttgatgaatcaaattt 19356702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 215
Target Start/End: Original strand, 41512298 - 41512441
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  41512298 caattctccttctttttgttttgtatttagtttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccataaaatatttatggccatg 41512397  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaa 215  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||    
T  41512398 agttaccaagttttggattttcctttacggtgtttcctttcaaa 41512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 42137645 - 42137496
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||    
T  42137645 caattctccttctttttgctttgtatttaatctgataaaccaaatttaatcagaaaacttaacgaaccaacttaacccccataaaatatttatggtcatg 42137546  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattact 221  Q
    ||||||||| ||||  ||||||||||| ||||||||| |||||| |||||    
T  42137545 agttaccaaattttatattttcctttacggtgtttccattcaaatttact 42137496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 46033621 - 46033470
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||| ||||||||||  ||||||    
T  46033621 caattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaactcaacaaaccaaattagcccccaaaaaatatttactgtcatg 46033522  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||||||||  ||||||||||  ||||||||| |||| | |||||||    
T  46033521 agttaccaagttttagattttcctttgcggtgtttccgttcagatttactgt 46033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 44740299 - 44740431
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  44740299 caattctccttctgtttgctttgtaattaacttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccgaaaaatatttattgtcatg 44740398  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| ||||| |||||| |||| |||||    
T  44740399 agttaccaaattttggattttcttttacggtgt 44740431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 47655832 - 47655680
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||    
T  47655832 caattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatatttatggtcat 47655733  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    || ||||||| ||||||||||| ||||| ||| |  || |||||| |||||||    
T  47655732 gacttaccaaattttgaatttttctttacggtatccccattcaaatttactgt 47655680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 162
Target Start/End: Original strand, 24075676 - 24075766
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatattt 162  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24075676 caattctatttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatattt 24075766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 50030982 - 50031116
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctcc-ataaaatatttatggtca 169  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| | ||||| ||||||||||    
T  50030982 caattctccttctttttgctttgtaatttaatttgatgaatcaaatttaattagaaaacttaacgaaccaaattagcgtccaaaaaaatgtttatggtca 50031081  T
Q  170 tgagttaccaagttttgaattttcctttatggtgt 204  Q
    ||| ||||||| ||||||||||| ||||| |||||    
T  50031082 tgacttaccaaattttgaatttttctttacggtgt 50031116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 13509879 - 13509733
Alignment:
Q  78 tccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagtta 176  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||| | |||||| ||||||||||||||||| ||  ||||| ||||||||||||| |||    
T  13509879 tccttctttttgctttgtaatttaacttgatgaaccaaatttaattacaaaactgaacgaaccaaattagcccccgaaaaatgtttatggtcatgactta 13509780  T
Q  177 ccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    |||| ||||||||||| ||||| |||||  || |||||| |||||||    
T  13509779 ccaaattttgaatttttctttacggtgtccccattcaaatttactgt 13509733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 1762372 - 1762496
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||| |||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||| |  |||||||||| |||||||    
T  1762372 caattctccttctttttggtttgtatttaatttgatgaaccaaattgtatcaaaaaatttaacgaaccaaattagcct-cggaaaatattta-ggtcatg 1762469  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    ||||||||| ||||| ||||| |||||    
T  1762470 agttaccaaattttggatttttcttta 1762496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 27416718 - 27416796
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctc 150  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27416718 caattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcctc 27416796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 207
Target Start/End: Original strand, 49430789 - 49430921
Alignment:
Q  75 ttctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagc-ctccataaaatatttatggtcatgag 173  Q
    |||| ||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||  ||| ||| | ||||||||||||||||||||    
T  49430789 ttcttcttctttttgctttgtaattaatttaatgaaccaaatttaatcaaaaaacttaacgaaccaaaccagctctcga-aaaatatttatggtcatgag 49430887  T
Q  174 ttaccaagttttgaattttcctttatggtgtttc 207  Q
    | ||||| ||||  ||||||||||| ||||||||    
T  49430888 tcaccaaattttagattttcctttacggtgtttc 49430921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 4485117 - 4485002
Alignment:
Q  83 ctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagt 182  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | |||||||| ||  ||||||||||||||||||| ||||||| |    
T  4485117 ctttttgctttgtaattaatttgatgaaccaaatttaattagaaaacttaacgaaactaattagcccccgaaaaatatttatggtcatgatttaccaaat 4485018  T
Q  183 tttgaattttccttta 198  Q
    |||  |||||| ||||    
T  4485017 tttagattttctttta 4485002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 96 - 198
Target Start/End: Original strand, 6706308 - 6706410
Alignment:
Q  96 atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcct 195  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||| ||||||||||||| ||||||| |||| || ||| ||    
T  6706308 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcctccgaaaaatgtttatggtcatgacttaccaaattttaaaattttct 6706407  T
Q  196 tta 198  Q
    |||    
T  6706408 tta 6706410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 213
Target Start/End: Original strand, 45179493 - 45179625
Alignment:
Q  80 cttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacca 179  Q
    |||||||||| |||||||||||||||||||| |||||||||||| |||| |  |||||||||||||||| | | |||||||||||||||||| |||||||    
T  45179493 cttctttttgatttgtatttaatttgatgaatcaaatttaatcaaaaaaatctacgaaccaaattagcc-ctacaaaatatttatggtcatgggttacca 45179591  T
Q  180 agttttgaattttcctttatggtgtttcctttca 213  Q
    ||||||| |||||  |||| ||| ||||| ||||    
T  45179592 agttttggatttttatttacggtttttccgttca 45179625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 11051030 - 11050903
Alignment:
Q  86 tttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtttt 185  Q
    ||||||||||| |||||||||||||||||||||| ||| |||| |||| | | ||||||||||  |  |||||||||||||| |||||||||||| ||||    
T  11051030 tttgctttgtaattaatttgatgaaccaaatttattcaaaaaaattaatggatcaaattagccctcgaaaaatatttatggtaatgagttaccaaatttt 11050931  T
Q  186 gaattttcctttatggtgtttcctttca 213  Q
      ||||||||||| ||||||||| ||||    
T  11050930 agattttcctttacggtgtttccgttca 11050903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 27067289 - 27067439
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||| |||||||| |||||||  | | | || ||||||||||||| |    
T  27067289 caattctccttctctttgatttgtatttaatttgatgaaccaaatttaataaaaaaaattaacgaatcaaattaaac-ctaaaagatatttatggtcagg 27067387  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||| ||||  ||||| ||||| ||| ||||| |||| | |||||||    
T  27067388 agttaccaaattttagatttttctttacggtttttccgttcagatttactgt 27067439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 186
Target Start/End: Original strand, 11829247 - 11829341
Alignment:
Q  91 tttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttg 186  Q
    |||||||||||||||| |||||||||||||||| |||| |||||||||||||||| || ||||||||||||||||    |||||||||||||||||    
T  11829247 tttgtatttaatttgaggaaccaaatttaatcaaaaaatttaacgaaccaaattaacc-ccataaaatatttatgaatctgagttaccaagttttg 11829341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 20473736 - 20473615
Alignment:
Q  84 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 183  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  || | |||||||||||||| | | ||| | ||||||| ||||| |||||||  |    
T  20473736 tttttgctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagccccaaaaaattgtttatggccatgatttaccaaact 20473637  T
Q  184 ttgaattttcctttatggtgtt 205  Q
    |||  |||||||||||||||||    
T  20473636 ttgggttttcctttatggtgtt 20473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 205
Target Start/End: Original strand, 20557817 - 20557938
Alignment:
Q  84 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 183  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  || | |||||||||||||| | | ||| | ||||||| ||||| |||||||  |    
T  20557817 tttttgctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagccccaaaaaattgtttatggccatgatttaccaaact 20557916  T
Q  184 ttgaattttcctttatggtgtt 205  Q
    |||  |||||||||||||||||    
T  20557917 ttgggttttcctttatggtgtt 20557938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 31100411 - 31100317
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggt 167  Q
    |||||||||||||||||| |||||||||||||| ||| |||| ||||||||| |||| |||||||| ||||||| || ||| |||||||| |||||    
T  31100411 caattctccttctttttggtttgtatttaatttaatgtaccacatttaatcaaaaaatttaacgaatcaaattaacc-ccaaaaaatattcatggt 31100317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 7385369 - 7385429
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaactt 131  Q
    ||||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||    
T  7385369 caattctccttctttttactttgtaatttaatttgatgaatcaaatttaattagaaaactt 7385429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 20364659 - 20364595
Alignment:
Q  84 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 148  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  || | ||||||||||||||    
T  20364659 tttttgctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagcc 20364595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 20546252 - 20546316
Alignment:
Q  84 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 148  Q
    ||||||||||||||||||||||||||||||||||| |||| |||  || | ||||||||||||||    
T  20546252 tttttgctttgtatttaatttgatgaaccaaatttgatcaaaaattttgatgaaccaaattagcc 20546316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 39732964 - 39733115
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || ||||||||||||||||||||||    
T  39732964 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattaacccccataaaatatttatggtcatg 39733063  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||||||||| ||| ||||| | |||||||||||||||| |||||||    
T  39733064 agttaccaagttttggattgtccttcacggtgtttcctttcaaatttactgt 39733115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 50523815 - 50523664
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  50523815 caattcttcttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagcccccataaaatatttatggtcatg 50523716  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||| ||||  |||||| |||| |||||||||||||||| |||||||    
T  50523715 agttaccaaattttagattttcatttacggtgtttcctttcaaatttactgt 50523664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 53663579 - 53663447
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |   ||||| ||||||||||||    
T  53663579 caatcctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaacttaacgaacctaattagcccctgaaaaatgtttatggtcatg 53663480  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| ||||| ||||||||||| |||||    
T  53663479 agttaccaaattttggattttcctttacggtgt 53663447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 22606304 - 22606171
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||| ||  ||||| ||||||||||||    
T  22606304 caattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagcgaaccaaattagcccccgaaaaatgtttatggtcatg 22606205  T
Q  172 ag-ttaccaagttttgaattttcctttatggtgt 204  Q
    || || |||| ||||||||||||||||| |||||    
T  22606204 agtttgccaaattttgaattttcctttacggtgt 22606171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 48407106 - 48407238
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||| || |||| |||||||||| ||  ||||||||||||||||||    
T  48407106 caattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcataaaacgtagcgaatcaaattagcccccgaaaaatatttatggtcatg 48407205  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| ||||||||||||||||| |||||    
T  48407206 agttaccaaattttgaattttcctttacggtgt 48407238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 74 - 207
Target Start/End: Original strand, 49723936 - 49724069
Alignment:
Q  74 attctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattag-cctccataaaatatttatggtcatga 172  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||| |||  | ||||| |||||||||||||    
T  49723936 attctccttctttttgctttgtaattaatttgataaaccaaatttaatcagaaaaattaacgaaccaaattagtccttga-aaaatgtttatggtcatga 49724034  T
Q  173 gttaccaagttttgaattttcctttatggtgtttc 207  Q
    |||||||| ||||| ||||||||||| ||||||||    
T  49724035 gttaccaaattttggattttcctttacggtgtttc 49724069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 45105960 - 45106092
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||| ||  ||| | ||||||||||||    
T  45105960 caattctctttctttttactttgtaattaatttgatgaaccaaatttaataagaaaacttaaccaaccaatttagcccccgaaaattgtttatggtcatg 45106059  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    |||||||||||||| |||||||||||| |||||    
T  45106060 agttaccaagttttaaattttcctttacggtgt 45106092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 5937789 - 5937694
Alignment:
Q  120 atcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaa 215  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  5937789 atcagaaaacttaacgaaccaaattagcccccataaaatatttatgatcatgagttaccaagttttggattttcctttacggtgtttcctttcaaa 5937694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 30418338 - 30418186
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||  ||||| |||||||||||    
T  30418338 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaatcaaattagcccccgaaaaatgtttatggtcat 30418239  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    || ||| | | ||||||||||| ||||| ||| |  || |||||| |||||||    
T  30418238 gacttatccaattttgaatttttctttacggtatccccattcaaatttactgt 30418186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 38767945 - 38768077
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||  |   ||||| ||||||||| ||    
T  38767945 caattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcggaaaacttagcgaaccaaattagcacctgaaaaatgtttatggtcgtg 38768044  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| ||||||||||| ||||| |||||    
T  38768045 agttaccaaattttgaatttttctttacggtgt 38768077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 191
Target Start/End: Original strand, 8510312 - 8510430
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||    
T  8510312 caattctccttccttttgctttgtatctaatttaatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc-ctagaaaataattatggtcatg 8510410  T
Q  172 agttaccaagttttgaattt 191  Q
    | ||| ||||||||| ||||    
T  8510411 aattatcaagttttggattt 8510430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 28963813 - 28963661
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||||     ||||| |||||||||||    
T  28963813 caattctctttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaattaaattagcccttgaaaaatgtttatggtcat 28963714  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    || ||| ||| ||||||||||| ||||| ||||| ||| |||||| |||||||    
T  28963713 gacttatcaaattttgaatttttctttacggtgtctccattcaaatttactgt 28963661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 16203033 - 16202916
Alignment:
Q  80 cttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttacca 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||| |||| |||| |||||||||| |  ||||||||||||||||||||||||||    
T  16203033 cttctttttggtttgtatttaatttgatgaaccaaatttaatcaaaaaaattaatgaactaaattagcct-cggaaaatatttatggtcatgagttacca 16202935  T
Q  180 agttttgaattttccttta 198  Q
    ||||||  ||||| |||||    
T  16202934 agttttagatttttcttta 16202916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 53404055 - 53403928
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||     |||||||| |||||||||||||||||| ||  ||||| ||||||||||||    
T  53404055 caattctccttttttttgctttgtaattaatttgatgaaccaaat-----cagaaaacataacgaaccaaattagccaccgaaaaatgtttatggtcatg 53403961  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| || |||||||| ||||| |||||    
T  53403960 agttaccaaattctgaatttttctttacggtgt 53403928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 29385981 - 29385837
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||||       |||||| |||||||||| |||||| ||||||||||||||||||| ||  |||||||||| |||||||    
T  29385981 caattctccttctttttgctttgtat-------gatgaatcaaatttaattagaaaatttaacgaaccaaattagcccccgaaaaatatttaaggtcatg 29385889  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    | ||||| | |||||||||||  |||| |||||  || |||||| |||||||    
T  29385888 acttacccaattttgaatttttatttacggtgtccccattcaaatttactgt 29385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 51677256 - 51677365
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||    | ||||||||||||||||||||||||||||| |||| | ||||| ||||||||| |||||  ||||||||||| |||||    
T  51677256 caattctccttcttttt----tttatttaatttgatgaaccaaatttaatcaaaaaattcaacgatccaaattag-ctccaggaaatatttatgatcatg 51677350  T
Q  172 agttaccaagttttg 186  Q
    |||||||||||||||    
T  51677351 agttaccaagttttg 51677365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 192
Target Start/End: Original strand, 28911752 - 28911852
Alignment:
Q  91 tttgtatttaatttgatgaaccaaatttaatcagaaaactt-aacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaat 189  Q
    |||||||||||||||| || ||||||||||||| |||| || ||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| |    
T  28911752 tttgtatttaatttgagga-ccaaatttaatcaaaaaaatttaacgaaccaaattagcc-ccataaaatatttatgaacatgagttaccaagttttgagt 28911849  T
Q  190 ttt 192  Q
    |||    
T  28911850 ttt 28911852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 26457265 - 26457341
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 148  Q
    |||||||| ||||||||||||| || || |||||||| ||| |||||||| ||||||||| ||||| ||||||||||    
T  26457265 caattctcattctttttgctttttaattgatttgatgtaccgaatttaattagaaaacttgacgaatcaaattagcc 26457341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 44002801 - 44002952
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||    
T  44002801 caattatccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacataacaaaccaaattagcccccataaaatatttatggtcatg 44002900  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||||||||| ||| ||||||| |||||||| ||||||| |||||||    
T  44002901 agttaccaagttttggattgtcctttacggtgtttcatttcaaatttactgt 44002952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 37640704 - 37640572
Alignment:
Q  73 aattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatga 172  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |   ||||| |||||||||||||    
T  37640704 aattctccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttaacgaaccaaattaacccctgaaaaatgtttatggtcatga 37640605  T
Q  173 gttaccaagttttgaattttcctttatggtgtt 205  Q
    |||| ||| ||||||||||||||||| ||||||    
T  37640604 gttaacaaattttgaattttcctttacggtgtt 37640572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 43342221 - 43342069
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||| |   |||||||||||||||||    
T  43342221 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacaaaccaaattagcccctgaaaaatatttatggtcat 43342122  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    || ||||||| ||||||||||| |||||  ||||  || |||||| |||||||    
T  43342121 gacttaccaaattttgaatttttctttacagtgtccccattcaaatttactgt 43342069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 7473672 - 7473804
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||||||| ||  ||||| ||||||||||||    
T  7473672 caattctctttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacttagtgaaccaaattagcccccgaaaaatgtttatggtcatg 7473771  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    | ||||||| |||| |||||||||||| |||||    
T  7473772 aattaccaaattttaaattttcctttacggtgt 7473804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 37996883 - 37996979
Alignment:
Q  84 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaa 180  Q
    ||||||||||||| || |||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||| |||||| | ||||||||||||    
T  37996883 tttttgctttgtaatttatttgatgaaccaaatttaatcggaaaacttaacgaatcaaattagcttccaaaaaatgtttatgataatgagttaccaa 37996979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 19860454 - 19860547
Alignment:
Q  130 ttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    |||||||||||||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||| || |||||| |||| | |||||||    
T  19860454 ttaacgaaccaaattagcttccagaaaatatttatggttatgagttaccaagttttggattttcctttacggcgtttccgttcagatttactgt 19860547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 35458129 - 35458052
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 148  Q
    ||||||||||||||||||||||||| |||||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  35458129 caattctccttctttttgctttgtaatttaatttgatgaatcatatttaattagaaaacttaacgaaccaaattagcc 35458052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 12015785 - 12015687
Alignment:
Q  86 tttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtttt 185  Q
    ||||||||||||||||||| ||||||||||||| || | |||| || |||||| |||||||||| |||||||||||||||||||||| ||||||| ||||    
T  12015785 tttgctttgtatttaatttaatgaaccaaatttgattaaaaaatttgacgaacgaaattagcct-cataaaatatttatggtcatgatttaccaaatttt 12015687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 43695117 - 43695242
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||| |||||||||||||| ||| ||||  |||||| | ||||  |||||||||||||||||| ||| |||||||| | |||||      
T  43695117 caattctccttctttttggtttgtatttaatttaatgtaccacgtttaataaaaaaatataacgaaccaaattagcc-ccaaaaaatattcacggtcaac 43695215  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    ||||||||||||||| ||||| |||||    
T  43695216 agttaccaagttttggatttttcttta 43695242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 32497138 - 32497028
Alignment:
Q  88 tgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttga 187  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    ||  ||||| ||||||||||| ||||  ||| ||||      
T  32497138 tgctttgtaattaatttgatgaatcaaatttaatcagaaaacttaacgaaccaaattattacccgaaaaatgtttatggtcatcagttgtcaaattttag 32497039  T
Q  188 attttccttta 198  Q
    |||||||||||    
T  32497038 attttccttta 32497028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 117
Target Start/End: Original strand, 17480968 - 17481014
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatt 117  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||    
T  17480968 caattctccttcattttgctttgtaatttaatttgatgaaccaaatt 17481014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 223
Target Start/End: Original strand, 17481005 - 17481093
Alignment:
Q  135 gaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    |||||||||||||| ||  |||||||||||| |||||| ||||||| |||| |||||| ||||| | |||  || |||||| |||||||    
T  17481005 gaaccaaattagcccccgaaaaatatttatgatcatgacttaccaaattttaaatttttctttacgatgtccccattcaaatttactgt 17481093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 26826526 - 26826658
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||||||||||||    
T  26826526 caattctccttctttttgctttgtaattaatgtgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatg 26826625  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| ||||||||||||||||| |||||    
T  26826626 agttaccaaattttgaattttcctttacggtgt 26826658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 213
Target Start/End: Complemental strand, 47158153 - 47158026
Alignment:
Q  84 tttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 183  Q
    ||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||| |    
T  47158153 tttttgctttgtattta-tttgatgaaccatatttaattagaaaacttaacgaaccaaattagc-tccagaaaatatttatgatcatgagttaccaaggt 47158056  T
Q  184 ttgaattttcctttatggtgtttcctttca 213  Q
    ||||||||||||||||||||||||| ||||    
T  47158055 ttgaattttcctttatggtgtttccattca 47158026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 25472709 - 25472557
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||| ||    
T  25472709 caattctccttctttttgctttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatatttatggtaat 25472610  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    || ||||| | ||||||||||| ||||| |||||  || |||||| |||||||    
T  25472609 gacttacccaattttgaatttttctttagggtgtccccattcaaatttactgt 25472557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 73 - 197
Target Start/End: Complemental strand, 43664758 - 43664635
Alignment:
Q  73 aattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatga 172  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| |||||||||| ||    
T  43664758 aattctccttctttttgctttgtaattaatttgatgaaccaaatttaatcagaaaatttaacgaaccaaattagccccca-aaaatgtttatggtcacga 43664660  T
Q  173 gttaccaagttttgaattttccttt 197  Q
    |||| ||||||||| ||||||||||    
T  43664659 gttatcaagttttggattttccttt 43664635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 26827707 - 26827579
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||||  |  ||||| ||||||||||||    
T  26827707 caattctccttctttttgctttgtaattaatttgatgaaccaaatttaat----aaacttaacgaaccaaattagccctcgaaaaatgtttatggtcatg 26827612  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| ||||||||||||||||| |||||    
T  26827611 agttaccaaattttgaattttcctttacggtgt 26827579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 72 - 223
Target Start/End: Complemental strand, 30139773 - 30139621
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||  ||||| |||| ||||||    
T  30139773 caattctccttctttttgctttgtaatttaatttgataaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttacggtcat 30139674  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    || ||||||| ||||||||||| ||||| | |||  || |||||| |||||||    
T  30139673 gacttaccaaattttgaatttttctttacgatgtccccattcaaatttactgt 30139621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 30825344 - 30825494
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||| || ||   |||| ||||||||||||    
T  30825344 caattctccttctttttgttttgtaattaatttgat-aaccaaatttaatcagaaaacttaaccaaccaaattatcccccgataaatgtttatggtcatg 30825442  T
Q  172 agttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    ||||||||| |||||||||||| |||| |||||  || |||||| |||||||    
T  30825443 agttaccaaattttgaattttcttttacggtgtccccattcaaatttactgt 30825494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 15000022 - 15000147
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    |||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| |   ||||| ||||||||||||    
T  15000022 caatcctccttcttttttctttgtaattaatttgatgaaccaaatttaatcagaaaacttaaagaacctaattagcccctgaaaaatgtttatggtcatg 15000121  T
Q  172 agttaccaagttttgaattttccttt 197  Q
    ||||||||| ||||| ||||||||||    
T  15000122 agttaccaaattttggattttccttt 15000147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 25970587 - 25970713
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||   | ||||||||||  || ||||||||||||||||||    
T  25970587 caattctccttctttttgctttgttattaatttgatgaaccaaatttaatgagaaaacttaatagatcaaattagccatcaaaaaatatttatggtcatg 25970686  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    | ||||||| ||||| |||||||||||    
T  25970687 aattaccaaattttggattttccttta 25970713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 2000107 - 1999990
Alignment:
Q  78 tccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttac 177  Q
    |||||||||||| |||||||||||||||| ||| |||||||||||| |||| ||||||||||||||||||  ||| |||||||||||||||||||||||     
T  2000107 tccttctttttggtttgtatttaatttgacgaagcaaatttaatcaaaaaatttaacgaaccaaattagc--ccaaaaaatatttatggtcatgagttat 2000010  T
Q  178 caagttttgaattttccttt 197  Q
    ||||||||| ||||| ||||    
T  2000009 caagttttgtatttttcttt 1999990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 198
Target Start/End: Complemental strand, 47085612 - 47085506
Alignment:
Q  91 tttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaatt 190  Q
    ||||||||||||||||||||||||||||||||| |||| |||  ||||||||||| ||| |||||||||||||||||||||||||||||| ||||| |||    
T  47085612 tttgtatttaatttgatgaaccaaatttaatcaaaaaatttatggaaccaaattaacct-cataaaatatttatggtcatgagttaccaaattttggatt 47085514  T
Q  191 ttccttta 198  Q
    || |||||    
T  47085513 tttcttta 47085506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 298581 - 298478
Alignment:
Q  94 gtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttc 193  Q
    |||||||||||||||||||||||||||||| |||| ||||| | ||||||||| ||||| ||||||||||||||||||||||| ||||||||| |||||     
T  298581 gtatttaatttgatgaaccaaatttaatcaaaaaatttaacaatccaaattag-ctccagaaaatatttatggtcatgagttatcaagttttggattttt 298483  T
Q  194 cttta 198  Q
    |||||    
T  298482 cttta 298478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 72 - 221
Target Start/End: Complemental strand, 25191806 - 25191657
Alignment:
Q  72 caattctccttcttttt-gctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    ||||||||||||||||| | ||||||||||||| ||||||||||| || |||| || | |||||||||||||||| || ||| |||||||||||| |||     
T  25191806 caattctccttcttttttggtttgtatttaattcgatgaaccaaagttgatcaaaagatttaacgaaccaaattaacc-ccaaaaaatatttatgatcaa 25191708  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattact 221  Q
    ||||| |||| | ||||||||| ||||| ||| ||||| |||||| |||||    
T  25191707 gagttgccaaatattgaatttttctttacggtttttccattcaaatttact 25191657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 32450905 - 32450977
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaatta 145  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  32450905 caattatccttctttttagtttgtatttaatttgatgaaccaaatttaat-aaaaaatttaacgaaccaaatta 32450977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 45202625 - 45202700
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcc 148  Q
    |||||||| |||||||||||||| | ||||||| ||||||| |||| ||||||||||||||| ||||||||||||||    
T  45202625 caattctcattctttttgctttgaaattaatttaatgaacc-aattaaatcagaaaacttaaagaaccaaattagcc 45202700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 11341647 - 11341723
Alignment:
Q  136 aaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcctttatggtgtttcctttca 213  Q
    ||||||||||||| ||||||||||||||||||||||| |||| ||| ||||  |||||||||| ||||||||| ||||    
T  11341647 aaccaaattagcc-ccataaaatatttatggtcatgatttacaaagatttgtgttttcctttacggtgtttccgttca 11341723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 26169891 - 26169764
Alignment:
Q  95 tatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcc 194  Q
    ||||||||||||||||||||||||||||| |||| ||||| |  |||||||  | | | ||||||||||| ||||||||||||||| ||||| | ||| |    
T  26169891 tatttaatttgatgaaccaaatttaatcaaaaaatttaacaattcaaattaatc-ctacaaaatatttatcgtcatgagttaccaaattttggaattttc 26169793  T
Q  195 tttatggtgtttcctttcaaaattactgt 223  Q
    |||| ||| | ||| |||| | |||||||    
T  26169792 tttacggtttctccgttcagatttactgt 26169764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 39857253 - 39857309
Alignment:
Q  135 gaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaatttt 192  Q
    |||||||||||||| | ||||||||||||||  ||||||||| ||||||||| |||||    
T  39857253 gaaccaaattagccac-ataaaatatttatgaacatgagttatcaagttttggatttt 39857309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 33006 - 32874
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |||| ||  ||||||||||||||||||    
T  33006 caattatccttctttttgctttgtaattaatttgatgaacaaaatttaatcagaaaacctaacgaaccaaatcagcccccgaaaaatatttatggtcatg 32907  T
Q  172 agttaccaagttttgaattttcctttatggtgt 204  Q
    ||||||||| ||||||||||||||||| |||||    
T  32906 agttaccaaattttgaattttcctttacggtgt 32874  T

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Target: scaffold0068 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 37849 - 37982
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||| |||||||| |     
T  37849 caattctccttctttttgttttgtaatttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcctccgaaaaatgtttatggtaac 37948  T
Q  171 gagttaccaagttttgaattttcctttatggtgt 204  Q
    || ||||||| ||||||||||| ||||| |||||    
T  37949 gacttaccaaattttgaatttttctttacggtgt 37982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 16965 - 17091
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||| | || ||||||||||||||||||||||| | | ||| | ||||||||||||    
T  16965 caattctccttctttttgcgttgtaattaatttgatgaaccaaatttatttaggaaacttaacgaaccaaattagccccgaaaaagtgtttatggtcatg 17064  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    ||||||||| ||||| |||||||||||    
T  17065 agttaccaaattttggattttccttta 17091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 72 - 198
Target Start/End: Original strand, 91690 - 91816
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatg 171  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |||| | | ||| | ||||||||||||    
T  91690 caattctccttctttttgctttgtaattaatttgatgaaccaaatttattcagaaaatttaacgaaccaaatcagccccgaaaaagtgtttatggtcatg 91789  T
Q  172 agttaccaagttttgaattttccttta 198  Q
    | ||||||| ||||| |||||||||||    
T  91790 aattaccaaattttggattttccttta 91816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 72 - 223
Target Start/End: Original strand, 27825153 - 27825304
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaat-cagaaaacttaacgaaccaaattagcctccataaaatatttatggtcat 170  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||  || ||||||||||||||||     
T  27825153 caattctccttctttttcgtttgtatttaatttgatgaaccaaatttaatccaaaaaatttaacgaaccaaattagcc-acaaaaaatatttatggtcag 27825251  T
Q  171 gagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    |||||||||||||||  ||||| ||||| ||| ||||| |||| | |||||||    
T  27825252 gagttaccaagttttagatttttctttacggtttttccgttcagatttactgt 27825304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 166
Target Start/End: Complemental strand, 20838439 - 20838345
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatgg 166  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||    
T  20838439 caattcacattctttttgctttgtatttaatttgatgaaccaaatttaatcaaaaaacttaacgaactaaattaacctccataaaatatttatgg 20838345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 4146992 - 4147064
Alignment:
Q  110 accaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagtt 183  Q
    |||||||||||||| |||| ||||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  4146992 accaaatttaatcaaaaaatttaacgaaccaaattagcc-ccataaaatatttacggacatgagttaccaagtt 4147064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 96 - 204
Target Start/End: Original strand, 10683333 - 10683441
Alignment:
Q  96 atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaattttcct 195  Q
    |||||||||||||||||||||||||| |||||| ||||| |||||||||| || ||   |||| |||||||| |||| ||||||| |||| |||||| ||    
T  10683333 atttaatttgatgaaccaaatttaattagaaaatttaacaaaccaaattaacccccgataaatgtttatggtaatgacttaccaaattttaaatttttct 10683432  T
Q  196 ttatggtgt 204  Q
    ||| |||||    
T  10683433 ttacggtgt 10683441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 177
Target Start/End: Original strand, 30134316 - 30134401
Alignment:
Q  91 tttgtatttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttac 177  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||  |||||||||||| | | |||||||| ||||| |||||||||    
T  30134316 tttgtatttaatttgataaaccaaatttaatcaaaaaagttaacataccaaattagcc-caagaaaatattgatggttatgagttac 30134401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 365751 - 365801
Alignment:
Q  72 caattctccttctttttgctttgta-tttaatttgatgaaccaaatttaat 121  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  365751 caattctgcttctttttgctttgtaatttaatttgatgaaccaaatttaat 365801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 4266 - 4362
Alignment:
Q  96 atttaatttgatgaaccaaatttaatcagaaaacttaacgaaccaaattagcctccataaaatatttatggtcatgagttaccaagttttgaatttt 192  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||| ||||||||||||| ||||||| |||||||||||    
T  4266 atttaatttgatgaaccaaatttaattagaaaacttaacgaaccaaattagcccccgaaaaatgtttatggtcatgacttaccaaattttgaatttt 4362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 9606 - 9550
Alignment:
Q  167 tcatgagttaccaagttttgaattttcctttatggtgtttcctttcaaaattactgt 223  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||  |||||||    
T  9606 tcatgagttaccaagttttgaatttttctttacggtgtttcctttcaagtttactgt 9550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 9638 - 9601
Alignment:
Q  72 caattctccttctttttgctttgtatttaatttgatga 109  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  9638 caattctccttctttttgcttcgtatttaatttcatga 9601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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