View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_high_12 (Length: 455)
Name: NF8143_high_12
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 48672681 - 48672235
Alignment:
| Q |
1 |
gaaaacaaaggcacatgatgttatatatgcctcagtgtaacagtatgcaatatcacaagccaggaattaaaatttaaaacaccaacttaactaaaactac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672681 |
gaaaacaaaggcacatgatgttatatatgcctcagtgtaacagtatgcaatatcacaagccaggaattaaaatttaaaacaccaacttaactaaaactac |
48672582 |
T |
|
| Q |
101 |
cattatttcatatcctaaataagtcttaatttcataatcatcatcactgatcaatatcatagattgatcataataataaaagtgctttttaattgagaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672581 |
cattatttcatatcctaaataagtcttaatttcataatcatcatcactgatcaatatcatagattgatcataataataaaagtgctttttaattgagaga |
48672482 |
T |
|
| Q |
201 |
agcagggtatgcatcaatgcagtcaagccaagggttcctagaagaaggttttgtaacacgacgcatcgaacgccaaacagcactgttacacttaaaacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672481 |
agcagggtatgcatcaatgcagtcaagccaagggttcctagaagaaggttttgtaacacgacgcatcgaacgccaaacagcactgttacacttaaaacca |
48672382 |
T |
|
| Q |
301 |
gaaccaaaagcaagttgccaaacacggtctcctcttttaactttttccttagcttccatataagcaagctcataccaaatgctgctactagaagtgttgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48672381 |
gaaccaaaagcaagttgccaaacacggtctcctcttttaactttttccttagcttccatataagcaagctcataccaaatgctgctactagaagtgttgc |
48672282 |
T |
|
| Q |
401 |
cgaatcggtgcagcgtcattctagaagcttccatgttcttctcactc |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48672281 |
cgaatcggtgcagcgtcattctagaagcttccatgttcttgtcactc |
48672235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 15239705 - 15239657
Alignment:
| Q |
273 |
ccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaa |
321 |
Q |
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|||||||||||| ||||||||||||||||||||||| |||| ||||||| |
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| T |
15239705 |
ccaaacagcactattacacttaaaaccagaaccaaatgcaatttgccaa |
15239657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 34053407 - 34053356
Alignment:
| Q |
270 |
acgccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaa |
321 |
Q |
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|||||| |||||||||||||| ||||| ||||||||||| |||| ||||||| |
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| T |
34053407 |
acgccacacagcactgttacatttaaatccagaaccaaatgcaatttgccaa |
34053356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Original strand, 19742804 - 19742853
Alignment:
| Q |
273 |
ccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaaa |
322 |
Q |
| |
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|||||||||| ||||||||||||| ||||| ||||| |||| |||||||| |
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| T |
19742804 |
ccaaacagcagtgttacacttaaatccagacccaaatgcaatttgccaaa |
19742853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 19797284 - 19797235
Alignment:
| Q |
273 |
ccaaacagcactgttacacttaaaaccagaaccaaaagcaagttgccaaa |
322 |
Q |
| |
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|||||||||| ||||||||||||| ||||| ||||| |||| |||||||| |
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| T |
19797284 |
ccaaacagcagtgttacacttaaatccagacccaaatgcaatttgccaaa |
19797235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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