View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_high_17 (Length: 367)
Name: NF8143_high_17
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 24454065 - 24453901
Alignment:
| Q |
23 |
cagccaaaacagagtccctgccgcaaaacaaaagcaggatgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacaga |
122 |
Q |
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| T |
24454065 |
cagccaaaacacagtccctgccgcaaaacagaagcaggatgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacaga |
24453966 |
T |
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| Q |
123 |
aatatgtttataacgtcaaacataccattacaaatagttaagtactctataaatagaggtaaaac |
187 |
Q |
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| T |
24453965 |
aatatgtttataacatcaaacataccattacaaatagttcagtactctataaatagagctaaaac |
24453901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 24453877 - 24453826
Alignment:
| Q |
187 |
ccctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaa |
238 |
Q |
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| T |
24453877 |
ccctaaaattattgcctttaaaacaaaacataattgaaaaacaactccctaa |
24453826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 180
Target Start/End: Complemental strand, 13457933 - 13457814
Alignment:
| Q |
62 |
tgttggttttata-gggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattacaaatagt |
160 |
Q |
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| T |
13457933 |
tgttggttttaaaagggatacgagagaaaaagtattatggaaatgatatattggaagacagaaatatgtttataacatcaagcacaccattacaaacact |
13457834 |
T |
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| Q |
161 |
taagtactctataaatagag |
180 |
Q |
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| T |
13457833 |
tcagtgctctataaatagag |
13457814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 31233476 - 31233594
Alignment:
| Q |
62 |
tgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattacaaatagtt |
161 |
Q |
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| T |
31233476 |
tgttggttttaaagggatatgagagaaaaaaatttatgaaaatgatatatttgtagacaaaaatatgtttataacatcaagcacaccattacaaacactt |
31233575 |
T |
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| Q |
162 |
aagtactctataaatagag |
180 |
Q |
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||| || ||||||||||| |
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| T |
31233576 |
cagtgctttataaatagag |
31233594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 31233625 - 31233682
Alignment:
| Q |
187 |
ccctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtctc |
244 |
Q |
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|||||||||||||| | | |||||||||||||||||||||||||||||||||| |||| |
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| T |
31233625 |
ccctaaaattattgtcttcaaaacaaaacataattgaaaaacaactcactaatatctc |
31233682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 13457782 - 13457727
Alignment:
| Q |
188 |
cctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtct |
243 |
Q |
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|||||||||||| | ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
13457782 |
cctaaaattattatctttaaaacaaaagataactgaaaaacaactcactaatgtct |
13457727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 23233752 - 23233859
Alignment:
| Q |
74 |
agggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaacataccattaca-aatagttaagtactctat |
172 |
Q |
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||||||| |||||||||||||||||||||||| |||||| |||||||||||| ||||||||| ||||||| ||||||||| |||| || ||| | |||| |
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| T |
23233752 |
agggatatgagagaaaaagtattatggaaatgatatattagaagacagaaataagtttataacatcaaacacaccattacacaatactttagtgccctat |
23233851 |
T |
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| Q |
173 |
aaatagag |
180 |
Q |
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|||||||| |
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| T |
23233852 |
aaatagag |
23233859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 33330755 - 33330676
Alignment:
| Q |
62 |
tgttggttttatagggataggagagaaaaagtattatggaaatgttatattgaaagacagaaatatgtttataacgtcaaac |
143 |
Q |
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||||||||||| ||| ||| ||||||||| ||| |||||||||| |||| | |||||||||||||||||||||| |||||| |
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| T |
33330755 |
tgttggttttaaagg-atatgagagaaaa-gtaatatggaaatgacatatcggaagacagaaatatgtttataacatcaaac |
33330676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 23233891 - 23233946
Alignment:
| Q |
188 |
cctaaaattattgcccttaaaacaaaacataattgaaaaacaactcactaatgtctc |
244 |
Q |
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| T |
23233891 |
cctaaaattattgtctttaaaacaaaacataactg-aaaacaactcactgatgtctc |
23233946 |
T |
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