View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8143_high_25 (Length: 303)
Name: NF8143_high_25
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_25 |
 | |
|
| [»] scaffold0650 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0650 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 7482 - 7316
Alignment:
| Q |
4 |
ggttgacacggcaaggtgtttgtttaattccaatcaatggaaattcaatgaaaaccatgcagtaatatggat--------tatatatatatggggtacca |
95 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
7482 |
ggttgacacggctaggtgtttgtttaattccaatcaatggaaattcaatgaaaatcatgcggcaatatggaaaatatatatatatatatatggggtacca |
7383 |
T |
|
| Q |
96 |
gcaatctttgtcgaaaggaagcaatacacatgaataagcataattaaacagcaaggggacttatgaa |
162 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7382 |
gcaatctatgtcgcaaggaagcaatacacatgaataagcataattaaacagcaaggggacttatgaa |
7316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0650; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 7320 - 7215
Alignment:
| Q |
198 |
atgaattgaataggtgtggcgcagtgaatagatacgggacagaaaaattaaatacggcaattggaatataggctgcgtgaattgaaggaatgacaaagaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7320 |
atgaattgaataggtgtggcgcagtgaatagatacgggacagaaaaattaaatacggcaactggaatataggctgcgtgaattgaagaaatgacaaagaa |
7221 |
T |
|
| Q |
298 |
aaaact |
303 |
Q |
| |
|
|||||| |
|
|
| T |
7220 |
aaaact |
7215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 4 - 162
Target Start/End: Complemental strand, 18432385 - 18432219
Alignment:
| Q |
4 |
ggttgacacggcaaggtgtttgtttaattccaatcaatggaaattcaatgaaaaccatgcagtaatatggat--------tatatatatatggggtacca |
95 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||||||||||| |
|
|
| T |
18432385 |
ggttgacacggctaggtgtttgtttaattccaatcaatggaaattcaatgaaaatcatgcggcaatatggaaaatatatatatatatatatggggtacca |
18432286 |
T |
|
| Q |
96 |
gcaatctttgtcgaaaggaagcaatacacatgaataagcataattaaacagcaaggggacttatgaa |
162 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18432285 |
gcaatctatgtcgcaaggaagcaatacacatgaataagcataattaaacagcaaggggacttatgaa |
18432219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 18432223 - 18432118
Alignment:
| Q |
198 |
atgaattgaataggtgtggcgcagtgaatagatacgggacagaaaaattaaatacggcaattggaatataggctgcgtgaattgaaggaatgacaaagaa |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18432223 |
atgaattgaataggtgtggcgcagtgaatagatacgggacagaaaaattaaatacggcaactggaatataggctgcgtgaattgaagaaatgacaaagaa |
18432124 |
T |
|
| Q |
298 |
aaaact |
303 |
Q |
| |
|
|||||| |
|
|
| T |
18432123 |
aaaact |
18432118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University