View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_high_27 (Length: 299)
Name: NF8143_high_27
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 52953704 - 52953433
Alignment:
| Q |
17 |
ccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953704 |
ccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagttt |
52953605 |
T |
|
| Q |
117 |
tgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttagcaaaacaccttcttctaggtaaaggctc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953604 |
tgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttagcaaaacaccttcttctaggtaaaggctc |
52953505 |
T |
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| Q |
217 |
acaccttttcaaaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcat |
288 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52953504 |
acaccttttcgaaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcat |
52953433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 288
Target Start/End: Original strand, 31903816 - 31904093
Alignment:
| Q |
11 |
tcatcaccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31903816 |
tcataaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa |
31903915 |
T |
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| Q |
111 |
cagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttagcaaaacaccttcttctaggtaa |
210 |
Q |
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| T |
31903916 |
cagttttgttactaacaggtttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttagcaaaacaccttcttcttggtaa |
31904015 |
T |
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| Q |
211 |
aggctcacaccttttcaaaatcaatttctgtgcaaaactccaatcatcttgacaatttccaaacactttgtaattcat |
288 |
Q |
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||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
31904016 |
aggctcacaccctttcaaaatcaatttctgagcataactccaatcatcttgacaatttccaaatactttgtaattcat |
31904093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 31921951 - 31922101
Alignment:
| Q |
11 |
tcatcaccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31921951 |
tcataaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa |
31922050 |
T |
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| Q |
111 |
cagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagat |
161 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31922051 |
cagttttgttactaacaggtttccaaagtgaagttggaaaaggatgaagat |
31922101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 31673723 - 31673573
Alignment:
| Q |
11 |
tcatcaccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa |
110 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31673723 |
tcataaccattaaccaaatcaaagcaatgcatgcaacccctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaa |
31673624 |
T |
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| Q |
111 |
cagttttgttactaacaggcttccaaagtgaagttggaaaaggatgaagat |
161 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
31673623 |
cagttttgttgctaacaggtttccaaagtgaagttggaaaaggatgaagat |
31673573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 258
Target Start/End: Complemental strand, 7760577 - 7760340
Alignment:
| Q |
15 |
caccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagt |
114 |
Q |
| |
|
||||| ||||||||||||| |||| | ||| ||||| |||||||||| || |||||||| |||||| |||||||| | |||||||||||||||| ||| |
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| T |
7760577 |
caccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaaaagt |
7760478 |
T |
|
| Q |
115 |
tttgttactaacaggcttccaaagtgaagttggaaaaggatgaagataatttaccttagaagaaacagatttagcaaaacaccttcttctaggtaaaggc |
214 |
Q |
| |
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|| |||| || |||||||||||| ||| ||||||||| || | | | | || ||||||| ||| | ||||||||||||||||||||||||| |
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| T |
7760477 |
gttattaccaagaggcttccaaagagaaacaggaaaagga--aaaaaacctgatttt----gaaacagtttttgaaaaacaccttcttctaggtaaaggc |
7760384 |
T |
|
| Q |
215 |
tcacaccttttcaaaatcaatttctgtgcaaaactccaatcatc |
258 |
Q |
| |
|
||||||| ||| || |||| |||||| || | |||||||||||| |
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| T |
7760383 |
tcacacccttttaagatcagtttctgagctacactccaatcatc |
7760340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 28959991 - 28959879
Alignment:
| Q |
15 |
caccattaaccaaatcaaagcaatgcatgcaacctctattcaatttcttaccattcaaacactcaaaattcttacaactaaaaccactccaattaacagt |
114 |
Q |
| |
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||||| ||||||||||||| |||| | ||| ||||| |||||||||| || |||||||| |||||| |||||||| | |||||||||||||||| ||| |
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| T |
28959991 |
caccactaaccaaatcaaaacaattaacacaatctctactcaatttctttcctttcaaacattcaaaactcttacaattcaaaccactccaattaaaagt |
28959892 |
T |
|
| Q |
115 |
tttgttactaaca |
127 |
Q |
| |
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|| |||| |||| |
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|
| T |
28959891 |
gttattaccaaca |
28959879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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