View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_high_31 (Length: 285)
Name: NF8143_high_31
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 28751895 - 28752151
Alignment:
| Q |
14 |
acctgtggagaatatggtatggcatgcatgaaagaaatatgaagtatgaatcatgcaatttttaatgattttaaaatgtgactagaaaaagcagtaatca |
113 |
Q |
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| T |
28751895 |
acctgtggagaatatggtatggcatgcatgaaagaaatatgaagtatgaatcatgcaattttgaatgattttaaaatgtgactagaaaaagcagtaatca |
28751994 |
T |
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| Q |
114 |
aaaccttcagtttcagaataataatgcaccagtattcacagatataacatgtcaaacaaagtcatatactaacttaaacttcgaactttgttcatattag |
213 |
Q |
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| T |
28751995 |
aaaccttcagtttcagaataataatgcaccagtattcacagatataacatgtcaaacaaagtcatatactaacttaaacttcgaactttgttcatattag |
28752094 |
T |
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| Q |
214 |
tcccaaaacatatccatcaacatatttaaatggaattggtactatccccaaaagatt |
270 |
Q |
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| T |
28752095 |
tcccaaaacatatccatcaacatatttaaatggaattggtactatccccaaaagatt |
28752151 |
T |
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Back To:
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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 144 - 270
Target Start/End: Complemental strand, 44866733 - 44866607
Alignment:
| Q |
144 |
agtattcacagatataacatgtcaaacaaagtcatatactaacttaaacttcgaactttgttcatattagtcccaaaacatatccatcaacatatttaaa |
243 |
Q |
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|||||||||| ||||||| |||||||||||||| ||||||| ||||| || ||||||||||||||| |||||||||| |||||||||| |||| ||||| |
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| T |
44866733 |
agtattcacaaatataacttgtcaaacaaagtcgcatactaagttaaaatttgaactttgttcatatcagtcccaaaatatatccatcatcataattaaa |
44866634 |
T |
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| Q |
244 |
tggaattggtactatccccaaaagatt |
270 |
Q |
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| T |
44866633 |
tggaatggatactatcccaaaaagatt |
44866607 |
T |
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