View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8143_high_37 (Length: 262)

Name: NF8143_high_37
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8143_high_37
NF8143_high_37
[»] chr4 (3 HSPs)
chr4 (24-210)||(43511286-43511486)
chr4 (115-202)||(39429897-39429984)
chr4 (121-202)||(39429232-39429313)
[»] chr8 (2 HSPs)
chr8 (115-202)||(42346065-42346152)
chr8 (121-202)||(42345401-42345482)
[»] chr5 (4 HSPs)
chr5 (115-202)||(1969780-1969867)
chr5 (115-202)||(9923389-9923476)
chr5 (169-202)||(4606943-4606976)
chr5 (174-202)||(12201437-12201465)
[»] chr3 (2 HSPs)
chr3 (115-202)||(43768719-43768806)
chr3 (174-202)||(47480567-47480595)
[»] chr2 (1 HSPs)
chr2 (115-202)||(20991979-20992066)
[»] chr7 (1 HSPs)
chr7 (115-161)||(32871141-32871187)
[»] chr1 (2 HSPs)
chr1 (115-202)||(50428106-50428193)
chr1 (174-202)||(29334907-29334935)


Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 43511286 - 43511486
Alignment:
Q  24 taaatgatggcaaatgttctaagtgtattccccttaacaacgacaaaatgtgatttaagggtgcataaatagtaagtacaaagta-------------ag 110  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||             |     
T  43511286 taaatgatggcaaatgttgtaattgtattccccttaacaacgacaaaatgtgatttaagggtgcataaaaagtaagtacaaaataatattagacagacaa 43511385  T
Q  111 taca-gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttatgcaccat 209  Q
    |||| |||||||||| ||||| ||||||||||||||||||| ||||| ||||       |||||||||||||||| ||||||||||||||||||||||||    
T  43511386 tacaggtggggtttagcatggaaatgaggagttgtttcctatcattgaaaagtttttttcaactattaaattaaaaaggagtattaattttatgcaccat 43511485  T
Q  210 a 210  Q
    |    
T  43511486 a 43511486  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 39429984 - 39429897
Alignment:
Q  115 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    |||||||||| ||||||||||  ||||||||||| ||||| ||||||       |||| |||||||||||||||||||||||||||||    
T  39429984 gtggggtttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattaaattaaagaggagtattaattttat 39429897  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 39429232 - 39429313
Alignment:
Q  121 tttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    |||| ||||||||||  ||||||||||||||||| ||||||       |||| |||| ||||| ||||||||||||||||||    
T  39429232 tttagcatgggaatggagagttgtttcctaccatgggaaagtttttttcaaccattagattaaggaggagtattaattttat 39429313  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 42346152 - 42346065
Alignment:
Q  115 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    |||||||||| ||||||||||  ||||||||||| | ||| ||||||       |||| |||| ||||||||||||||||||||||||    
T  42346152 gtggggtttagcatgggaatggagagttgtttcccatcatgggaaagtttttttcaaccattagattaaagaggagtattaattttat 42346065  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 202
Target Start/End: Original strand, 42345401 - 42345482
Alignment:
Q  121 tttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    |||| ||||||||||  ||||||||||| ||||| ||||||       |||| |||| ||||| ||||||||||||||||||    
T  42345401 tttagcatgggaatggagagttgtttcccaccatgggaaagtttttttcaaccattagattaaggaggagtattaattttat 42345482  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 1969780 - 1969867
Alignment:
Q  115 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    |||||||||| ||||||||||  |||||||||  |||||| ||||||       |||| |||| ||||||||||||||||||||||||    
T  1969780 gtggggtttagcatgggaatggagagttgttttttaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttat 1969867  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 9923389 - 9923476
Alignment:
Q  115 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    |||||||||| ||||||||||  ||||||||||| ||||| | ||||       |||| |||| ||||||||||||||||||||||||    
T  9923389 gtggggtttagcatgggaatggagagttgtttcccaccatggaaaagtttttttcaaccattagattaaagaggagtattaattttat 9923476  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 4606943 - 4606976
Alignment:
Q  169 caactattaaattaaagaggagtattaattttat 202  Q
    |||| |||||||||||||||||||||||||||||    
T  4606943 caaccattaaattaaagaggagtattaattttat 4606976  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 12201437 - 12201465
Alignment:
Q  174 attaaattaaagaggagtattaattttat 202  Q
    |||||||||||||||||||||||||||||    
T  12201437 attaaattaaagaggagtattaattttat 12201465  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 43768806 - 43768719
Alignment:
Q  115 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    |||||||||| ||||||||||  ||||||||| | ||||| ||||||       |||| |||| ||||||||||||||||||||||||    
T  43768806 gtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttat 43768719  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 47480567 - 47480595
Alignment:
Q  174 attaaattaaagaggagtattaattttat 202  Q
    |||||||||||||||||||||||||||||    
T  47480567 attaaattaaagaggagtattaattttat 47480595  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 20992066 - 20991979
Alignment:
Q  115 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    |||||||||| ||||||||||  ||||||||| | ||||| ||||||       |||| |||| ||||||||||||||||||||||||    
T  20992066 gtggggtttagcatgggaatggagagttgttttccaccatgggaaagtttttttcaaccattagattaaagaggagtattaattttat 20991979  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 32871187 - 32871141
Alignment:
Q  115 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaag 161  Q
    |||||||||| |||||||||| |||||||||||| ||||| ||||||    
T  32871187 gtggggtttagcatgggaatggggagttgtttcccaccataggaaag 32871141  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Complemental strand, 50428193 - 50428106
Alignment:
Q  115 gtggggtttatcatgggaatgaggagttgtttcctaccattggaaagnnnnnnncaactattaaattaaagaggagtattaattttat 202  Q
    ||||||||||  |||||||||  ||||||||| | | ||| ||||||       |||| |||||||||||||||||||||||||||||    
T  50428193 gtggggtttagaatgggaatggagagttgttttccatcatgggaaagtttttttcaaccattaaattaaagaggagtattaattttat 50428106  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 29334935 - 29334907
Alignment:
Q  174 attaaattaaagaggagtattaattttat 202  Q
    |||||||||||||||||||||||||||||    
T  29334935 attaaattaaagaggagtattaattttat 29334907  T

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