View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_high_40 (Length: 250)
Name: NF8143_high_40
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 49766605 - 49766414
Alignment:
| Q |
1 |
aactctatggttgatgcagatgatgaatattttagtccaagaaaaagaaatgggttttggtcttttctctatcattcttcaaaatcttcaacttcttcca |
100 |
Q |
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| T |
49766605 |
aactctatggttgatgcagatgatgaatattttagtccaagaaaaagaaatgggttttggtcttttctctatcattcttcaaaatcttcaacttcttcca |
49766506 |
T |
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| Q |
101 |
agagctttagtaatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgtt |
192 |
Q |
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| T |
49766505 |
agagctttagtaatactactgcttcagctaagcttaaggaaaagtgttgttcaggttcttctttaggaagaaagaacgacattgttattgtt |
49766414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 49766396 - 49766366
Alignment:
| Q |
210 |
taacagtcctaatagcaacaacacaggttct |
240 |
Q |
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| T |
49766396 |
taacagtcctaatagcaacaacacaggttct |
49766366 |
T |
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