View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8143_high_42 (Length: 249)
Name: NF8143_high_42
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_42 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 19373330 - 19373096
Alignment:
| Q |
14 |
cctgtgtaattaaataggtcatataatgtgagtggctgatctattcattaatttttggttagtaatacacccaatactagtttcgtcattgctaatagtg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19373330 |
cctgtgtaattaaataggtcatataatgtgagtggctgatctattcattaatttttggttagtaatacacccaatactagttttgtcattgctaatagtg |
19373231 |
T |
|
| Q |
114 |
actgaagctgcagggtactgccttgtctagttatctacttatcttacaaggaaattgatgttctctatgaaagaaaaagacgcaaatttgtatgaaagcg |
213 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19373230 |
actgaagctgcagg-tactgccttgtctagttatctacttatcttacaaggaaattgatgttctctatgaaagaaaaagacgcaaatttgtatgaaagcg |
19373132 |
T |
|
| Q |
214 |
cttacttttgtaggatcgcgttagattgcttttact |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
19373131 |
cttacttttgtaggatcgcgttagattgcttttact |
19373096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University