View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_high_44 (Length: 244)
Name: NF8143_high_44
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 28948856 - 28948626
Alignment:
| Q |
1 |
ttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948856 |
ttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaag |
28948757 |
T |
|
| Q |
101 |
aagagaaagatggtgaattagttgtttcaaagaagatactagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28948756 |
aagagaaagatggtgaattagttgtttcaaagaagatactagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgta |
28948657 |
T |
|
| Q |
201 |
ttcatcagttaatttcttcttatcgttgatg |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
28948656 |
ttcatcagttaatttcttcttatcgttgatg |
28948626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 43015191 - 43015272
Alignment:
| Q |
52 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
133 |
Q |
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|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| || || | ||||||||||||| |
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| T |
43015191 |
gagaagacgaattgggtgatgcatcaataccatcttggacaacatgaagaagagaaagaaggagagcttgttgtttcaaaga |
43015272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 34830001 - 34829870
Alignment:
| Q |
1 |
ttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34830001 |
ttcaagaagatactagtcctctacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaag |
34829902 |
T |
|
| Q |
101 |
aagagaaagatggtgaattagttgtttcaaag |
132 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
34829901 |
aagagaaagatggtgaattagttgtttcaaag |
34829870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 139 - 231
Target Start/End: Complemental strand, 34814073 - 34813981
Alignment:
| Q |
139 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
231 |
Q |
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| T |
34814073 |
ctagaatatctctcgtccagtgagcgacgattagcttgcaattcagtaatacggttcatgtattcatcagttaatttcttcttatcgttgatg |
34813981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 30505888 - 30505976
Alignment:
| Q |
22 |
tacaccaactatggaaggcaaaagaagcctgagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaaga |
110 |
Q |
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||||| |||||||||| |||| ||||| ||||| || ||||||||||||||||| || || ||||| ||| |||||||||||||||| |
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| T |
30505888 |
tacacaaactatggaaaacaaagaaagccagagaaaacaaattgggtgatgcatcagtatcatcttgggagtgatgaagaagagaaaga |
30505976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 4235787 - 4235868
Alignment:
| Q |
52 |
gagaagaccaattgggtgatgcatcaataccaccttggtagtaatgaagaagagaaagatggtgaattagttgtttcaaaga |
133 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||| ||||||||||| | |||||| ||||| |||| |||||||| |
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| T |
4235787 |
gagaagactaattgggtgatgcatcaataccatcttggtatgaatgaagaagaaagagatggagaattcgttgcttcaaaga |
4235868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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