View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8143_high_47 (Length: 241)
Name: NF8143_high_47
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_47 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 26187249 - 26187480
Alignment:
| Q |
1 |
tattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttcaattctactataacctacaaaagtattcagagttttcccacaacacactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
26187249 |
tattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttcaattctattataacctacgaaagcattcagagttttcccacaacacactc |
26187348 |
T |
|
| Q |
101 |
agcatcacatcagagttcactgatacttctcattaaaggcatgtttggtgttcgatacaatgtgattacacttggttatgttattttataaattcctatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26187349 |
agcatcacatcagagttcactgatacttctcattaaaggcatgtttggtgttcgatacaatgtgattacacttggttatgttattttttaaattcctatc |
26187448 |
T |
|
| Q |
201 |
agtgtcaatgtgtcattgtcgtatttgatgtc |
232 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |
|
|
| T |
26187449 |
agtgtcaatgtgtcattgtcgtgtttggtgtc |
26187480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 26158290 - 26158395
Alignment:
| Q |
1 |
tattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttcaattctactataacctacaaaagtattcagagttttcccacaacacactc |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| | |
|
|
| T |
26158290 |
tattccaaagtcagccagtattactaaatagaaaccatgcttcaattttcaattctactataacctacaaaagca-tcagagttttcccacgacacaccc |
26158388 |
T |
|
| Q |
101 |
agcatca |
107 |
Q |
| |
|
||||||| |
|
|
| T |
26158389 |
agcatca |
26158395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 26122185 - 26122256
Alignment:
| Q |
1 |
tattccaaagtgagcctgtattactaaatagaaaccatgcttcaattttcaattctactataacctacaaaag |
73 |
Q |
| |
|
||||||||||||| || ||| ||||||| |||||||||||| |||||||| ||||| ||||| ||||||||| |
|
|
| T |
26122185 |
tattccaaagtgatccagtaatactaaaaagaaaccatgctagaattttcacttcta-tataagctacaaaag |
26122256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University