View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_high_48 (Length: 240)
Name: NF8143_high_48
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 33270539 - 33270760
Alignment:
| Q |
1 |
caaaatccacaagaaaattaacagttaaatgatgaaattaattaagtacctgaaaactccaaatgcaacttgaaaaattccagcaaataatgttacagta |
100 |
Q |
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| T |
33270539 |
caaaatccacaagaaaattaacagttaaatgatgaaattaattaagtacctgaaaactccaaatgcaacttgaaaaattccagcaaataatgttacagta |
33270638 |
T |
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| Q |
101 |
aagacaaaatttctgtaaccatcatgatttaaatctggatcaaccactttgtgacataaggaagatagcagcagtgacactacagctacaggtccaattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33270639 |
aagacaaaatttctgtaaccatcatgatttaaatctggatcaaccactttgtgacataaggaagatagcagcagtgacactacggctacaggtccaattg |
33270738 |
T |
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| Q |
201 |
caatttctcttgaactccccat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
33270739 |
caatttctcttgaactccccat |
33270760 |
T |
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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 25707440 - 25707504
Alignment:
| Q |
158 |
aaggaagatagcagcagtgacactacagctacaggtccaattgcaatttctcttgaactccccat |
222 |
Q |
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| T |
25707440 |
aaggaagataaaagcatagacactacagctacaggtccaattgcaatgtctcttgagcttcccat |
25707504 |
T |
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