View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8143_high_5 (Length: 485)
Name: NF8143_high_5
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 33270496 - 33270015
Alignment:
| Q |
1 |
cacctaaaggtctcaggtttcattctctccggtggcaatttagaaactgttaattttcttttaaatgtatagattgaatgattaatttaatctgctgcag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270496 |
cacctaaaggtctcaggtttcattctctccggtggcaatttgaaaactgttaattttcttttaaatgtatagattgaatgattaatttaatctgctgcag |
33270397 |
T |
|
| Q |
101 |
gttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttgctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270396 |
gttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttgctt |
33270297 |
T |
|
| Q |
201 |
gggattagtaacttcaccaacaaatccgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaattccatccggagaagtaagtactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33270296 |
gggattagtaacttcaccaacaaatctgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaattccatccggagaagtaagtactt |
33270197 |
T |
|
| Q |
301 |
ttttcattttctgggagagaaattcaaatattataaccatagttcccaagtatattgtaattgcaaaattatccttgaacgtgttctctgttagtaaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
33270196 |
ttttcattttctgggagagaaattcaaatattataaccatagttcccaagtatattgtaattgcaaaaatatccttgagtgtgttctttgttagtaaact |
33270097 |
T |
|
| Q |
401 |
cgtggactaaacaaactaatgagaaagtagaaacatattcgaggattaaactaattaatgaaagatatttgaacacgaaact |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
33270096 |
cgtggactaaacaaactaatgagaaagtagaaacatattcgaggattaaactaactcatgaaagatatttgaagacgaaact |
33270015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 39751605 - 39751685
Alignment:
| Q |
98 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtct |
178 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||||| |||| ||||| | ||||| || ||||| |||||||||| |
|
|
| T |
39751605 |
caggttggggttccttgtggattttctgtcacatgctgcaattgttggatttgtagcaggagctgccattgtgattggtct |
39751685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 119 - 259
Target Start/End: Complemental strand, 34662170 - 34662031
Alignment:
| Q |
119 |
ttttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttgcttgggattagtaacttcacc |
218 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||| ||| |||| |||||||| ||||||||| |
|
|
| T |
34662170 |
ttttttatcacatgctgcacttgtaggatttatggcaggtgcagccatcttgattggtcttcaa-agcttaaagggctgctagggattagcaacttcacc |
34662072 |
T |
|
| Q |
219 |
aacaaatccgatgttgtttctgttttggaatctgtttataa |
259 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
34662071 |
aacaaatctgatgttgtttgtgttttggaatctgtttataa |
34662031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 98 - 278
Target Start/End: Complemental strand, 25707237 - 25707057
Alignment:
| Q |
98 |
caggttgggatttcttgtggattttttgtcacatgctgcacttgtaggattcatggcaggtgcagccatcatgattggtctgcagcagcttaaggggttg |
197 |
Q |
| |
|
||||||||| ||||||||||||||| | |||||||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||||| ||||| | |
|
|
| T |
25707237 |
caggttgggttttcttgtggattttctttcacatgctgcactagttggattcatggcaggagcagcaatcattattggtcttcagcagctcaagggtctt |
25707138 |
T |
|
| Q |
198 |
cttgggattagtaacttcaccaacaaatccgatgttgtttctgttttggaatctgtttataagtcactccatcatcaaatt |
278 |
Q |
| |
|
| ||||||| | ||||||||| |||| | |||| || || || |||| ||||||||||||||| | ||||| |||||| |
|
|
| T |
25707137 |
ttggggattactcacttcaccaccaaaacagatgcagtatcagtattggtttctgtttataagtcattacatcaacaaatt |
25707057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University