View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_high_53 (Length: 221)
Name: NF8143_high_53
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_high_53 |
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| [»] scaffold0650 (1 HSPs) |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: scaffold0650 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: scaffold0650
Description:
Target: scaffold0650; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 7709 - 7493
Alignment:
| Q |
5 |
tgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaagaggaaattgtgagttgtgacgatt |
104 |
Q |
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| T |
7709 |
tgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaatctccttcagaaaaaattggaagaggaaattgtgagttgtgacaatt |
7610 |
T |
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| Q |
105 |
aatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagtagcagcaaggtactcttagaactcaaacaacacgtacagcaaccgcac |
204 |
Q |
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| T |
7609 |
aatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagtagcagcaaggtagtcttagaactcaaacaacacgtacagcaaccgcac |
7510 |
T |
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| Q |
205 |
caatatatttgcacacc |
221 |
Q |
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| T |
7509 |
caatatatttgcacacc |
7493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 18432612 - 18432396
Alignment:
| Q |
5 |
tgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaagaggaaattgtgagttgtgacgatt |
104 |
Q |
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| T |
18432612 |
tgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaatctccttcagaaaaaattggaagaggaaattgtgagttgtgacaatt |
18432513 |
T |
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| Q |
105 |
aatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagtagcagcaaggtactcttagaactcaaacaacacgtacagcaaccgcac |
204 |
Q |
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| T |
18432512 |
aatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagtagcagcaaggtagtcttagaactcaaacaacacgtacagcaaccgcac |
18432413 |
T |
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| Q |
205 |
caatatatttgcacacc |
221 |
Q |
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| T |
18432412 |
caatatatttgcacacc |
18432396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 18444982 - 18444826
Alignment:
| Q |
1 |
aagttgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaagaggaaattgtgagttgtgac |
100 |
Q |
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| T |
18444982 |
aagttgtgagcgaaaaatcaatgtaacaaataaatattaaatacttgtaggaggaaatctccttcaccaaaaattggaagaggaaattgtgagttgtgac |
18444883 |
T |
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| Q |
101 |
gattaatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
157 |
Q |
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| T |
18444882 |
aattaatatatttatagtgaaccacaatgacagtgcgtttttcatttttcacaagta |
18444826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 18436804 - 18436653
Alignment:
| Q |
5 |
tgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaagaggaaattgtgagttgtgacgatt |
104 |
Q |
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| T |
18436804 |
tgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacgaggaaa-ctccttcaccgaaaattggaagaggaaattgtgagttgtgacaatt |
18436706 |
T |
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| Q |
105 |
aatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
157 |
Q |
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| T |
18436705 |
aatatatttatagtgatccacaatgacagtgcgtttttcatttttcacaagta |
18436653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 18441080 - 18440928
Alignment:
| Q |
5 |
tgtaagcgaaaaatcaatgtaacaaataaatattaaatacttgtacaaggaaatctccttcnnnnnnnnttggaagaggaaattgtgagttgtgacgatt |
104 |
Q |
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| T |
18441080 |
tgtaagcgaaaaatcaatgtaacaaataaatattaaatacttatacgaggaaatcttcttcaccgaaaattggaagaggaaattgtgagttgtgacaatt |
18440981 |
T |
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| Q |
105 |
aatatatttatagtgaagcacaatgacagtgtgttttccatttttcacaagta |
157 |
Q |
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| T |
18440980 |
aatatatttatagtgatccataatgacagtgcgtttttcatttttcacaagta |
18440928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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