View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8143_low_1 (Length: 620)

Name: NF8143_low_1
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8143_low_1
NF8143_low_1
[»] chr5 (2 HSPs)
chr5 (1-257)||(3124643-3124899)
chr5 (257-329)||(10570944-10571017)
[»] chr7 (2 HSPs)
chr7 (263-342)||(35105622-35105702)
chr7 (152-184)||(28251993-28252025)
[»] chr6 (1 HSPs)
chr6 (257-339)||(32876021-32876104)
[»] chr3 (2 HSPs)
chr3 (262-333)||(41740399-41740471)
chr3 (257-342)||(41741286-41741372)
[»] chr4 (5 HSPs)
chr4 (145-185)||(12618708-12618748)
chr4 (256-302)||(39095879-39095925)
chr4 (151-184)||(2076846-2076879)
chr4 (255-340)||(23176331-23176415)
chr4 (263-342)||(39096681-39096761)
[»] chr1 (3 HSPs)
chr1 (263-333)||(15911193-15911264)
chr1 (257-333)||(47510488-47510565)
chr1 (262-329)||(15910529-15910597)
[»] chr8 (1 HSPs)
chr8 (151-185)||(44960515-44960549)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 3124899 - 3124643
Alignment:
Q  1 aatcaagattctttttgttttattgatcttacaataattgatagtcagatattattatttgatgtgggtctagtctaaaggtagaaaattagaaatgaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3124899 aatcaagattctttttgttttattgatcttacaataattgatagtcagatattattatttgatgtgggtctagtctaaaggtagaaaattagaaatgaga 3124800  T
Q  101 aaaaagacaaaggaaaattgctaacgaatatcttcggatattttttaagattttatgaaaatttatataatcaatgcattgaaataattcttcattttgg 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3124799 aaaaagactaaggaaaattgctaacgaatatcttcggatattttttaagattttatgaaaatttatataatcaatgcattgaaataattcttcattttgg 3124700  T
Q  201 agtccttaaaggatgatccaggatattcattagttagattatgacaaattccaaaag 257  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  3124699 agtccttaaaggatgacccaggatattcattagttagattaggacaaattccaaaag 3124643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 10571017 - 10570944
Alignment:
Q  257 ggaaccggatcctctcctttaaaattgtctacatctctctccttcctcaa-tcttagccattggatcaatctaa 329  Q
    ||||||||||||||| ||| |||||||||| | |||||||||||   ||| ||||||  |||||||||||||||    
T  10571017 ggaaccggatcctcttcttcaaaattgtctccttctctctccttgtgcaattcttagtaattggatcaatctaa 10570944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 35105622 - 35105702
Alignment:
Q  263 ggatcctctcctttaaaattgtctacatctctctccttcctc-aatcttagccattggatcaatctaatggttgacatatt 342  Q
    |||||||||||||||||| ||||| | ||||||||||||||| ||||||| ||||| ||||||||||| ||| ||||||||    
T  35105622 ggatcctctcctttaaaactgtctccttctctctccttcctcaaatcttaaccattagatcaatctaacggtggacatatt 35105702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 28251993 - 28252025
Alignment:
Q  152 tttatgaaaatttatataatcaatgcattgaaa 184  Q
    ||||||||||| |||||||||||||||||||||    
T  28251993 tttatgaaaatgtatataatcaatgcattgaaa 28252025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 257 - 339
Target Start/End: Original strand, 32876021 - 32876104
Alignment:
Q  257 ggaaccggatcctctcctttaaaattgtctacatctctctccttcctcaa-tcttagccattggatcaatctaatggttgacat 339  Q
    |||||| |||||||||||| ||||||| |  ||||||||||||||  ||| |||||| ||||||||||||||||| ||||||||    
T  32876021 ggaaccagatcctctccttcaaaattgccaccatctctctccttcaccaaatcttagtcattggatcaatctaattgttgacat 32876104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 41740399 - 41740471
Alignment:
Q  262 cggatcctctcctttaaaattgtctacatctctctccttcct-caatcttagccattggatcaatctaatggt 333  Q
    |||||||||||||| |||||| ||| |||||||||||||| | || || ||||||||||||||||| ||||||    
T  41740399 cggatcctctccttcaaaattctctccatctctctccttcatccattcctagccattggatcaatcaaatggt 41740471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 41741372 - 41741286
Alignment:
Q  257 ggaaccggatcctctcctttaaaattgtctacatctctctccttcctc-aatcttagccattggatcaatctaatggttgacatatt 342  Q
    |||| |||||||||||||| | |||| ||| |||||||||||||| || | || ||||||||||||||||| |||||| || |||||    
T  41741372 ggaatcggatcctctccttcagaattctctccatctctctccttcatctattcctagccattggatcaatcaaatggtggaaatatt 41741286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 12618708 - 12618748
Alignment:
Q  145 ttaagattttatgaaaatttatataatcaatgcattgaaat 185  Q
    ||||| |||||||||||||| ||||||||||||||||||||    
T  12618708 ttaagtttttatgaaaatttgtataatcaatgcattgaaat 12618748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 39095879 - 39095925
Alignment:
Q  256 aggaaccggatcctctcctttaaaattgtctacatctctctccttcc 302  Q
    ||||| |||||||||||||| |||||||||| | |||||||||||||    
T  39095879 aggaatcggatcctctccttcaaaattgtctccttctctctccttcc 39095925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 184
Target Start/End: Complemental strand, 2076879 - 2076846
Alignment:
Q  151 ttttatgaaaatttatataatcaatgcattgaaa 184  Q
    |||||||||||| |||||||||||||||||||||    
T  2076879 ttttatgaaaatatatataatcaatgcattgaaa 2076846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 340
Target Start/End: Original strand, 23176331 - 23176415
Alignment:
Q  255 aaggaaccggatcctctcctttaaaattgtctacatctctctccttcctcaatcttagccattggatcaatctaatggttgacata 340  Q
    |||||| | |||||||||||| |||||||||| | ||||||||||| || ||| ||| ||||| ||| ||||||| ||| ||||||    
T  23176331 aaggaatcagatcctctccttcaaaattgtctccttctctctcctt-cttaatattatccattagatgaatctaacggtggacata 23176415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 39096761 - 39096681
Alignment:
Q  263 ggatcctctcctttaaaattgtctacatctctctccttcc-tcaatcttagccattggatcaatctaatggttgacatatt 342  Q
    ||||| ||||||| |||||||||| | ||||||||||||| | ||| ||||||||| ||| |||||||  || ||||||||    
T  39096761 ggatcatctccttcaaaattgtctccttctctctccttcctttaatattagccattagatgaatctaactgtagacatatt 39096681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 15911264 - 15911193
Alignment:
Q  263 ggatcctctcctttaaaattgtctacatctctctccttcc-tcaatcttagccattggatcaatctaatggt 333  Q
    ||||||||||||| |||||||||| | ||||||||||||| | | |||||| |||  |||||||||||||||    
T  15911264 ggatcctctccttcaaaattgtctccttctctctccttccataattcttagtcatctgatcaatctaatggt 15911193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 47510488 - 47510565
Alignment:
Q  257 ggaaccggatcctctcctttaaaattgtctacatctctctccttcct-caatcttagccattggatcaatctaatggt 333  Q
    |||| |||||||||||||| | |||| ||| ||||||||| |||| | || || ||||||||||||||||| ||||||    
T  47510488 ggaatcggatcctctccttcagaattctctccatctctctgcttcatccattcctagccattggatcaatcaaatggt 47510565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 262 - 329
Target Start/End: Original strand, 15910529 - 15910597
Alignment:
Q  262 cggatcctctcctttaaaattgtctacatctctctccttcctcaa-tcttagccattggatcaatctaa 329  Q
    |||||||||||||| ||||||||||   ||||||||||||  ||| |||||| |||||||| |||||||    
T  15910529 cggatcctctccttcaaaattgtctcattctctctccttcggcaattcttagtcattggattaatctaa 15910597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 44960549 - 44960515
Alignment:
Q  151 ttttatgaaaatttatataatcaatgcattgaaat 185  Q
    |||||||||||||||| ||||||||||||||||||    
T  44960549 ttttatgaaaatttatgtaatcaatgcattgaaat 44960515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University