View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_11 (Length: 470)
Name: NF8143_low_11
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Original strand, 4487196 - 4487623
Alignment:
| Q |
20 |
atcaatacaagaaagagccatgagaccatcacaactcgagttaagttgctgtacatttctgcccctgcaaaataaaatcatagacattagatgagttcaa |
119 |
Q |
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| T |
4487196 |
atcaatacaagaaagagccatgagaccatcacaactcgagttaagttgctgtgcatttctgcccctgcaaaataaaatcatagacattagatgagttcaa |
4487295 |
T |
|
| Q |
120 |
attcaatgtttcaaattaggagctttctgtaacaggtttgtctgttttgcataattttatttcgcatcaaaattgtaaggaagtttgagattgatatgga |
219 |
Q |
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| T |
4487296 |
attcaatgtttcaaattaggagctttctgtaacaggtttgtctgttttgcataattttatttcgcatcaaaactgtaaggaagtttgagattgatatgga |
4487395 |
T |
|
| Q |
220 |
ccattggggtctaacgaaagtggttcatgtgcagtgtgtgcgagtgttgtaaaccgcggagtaccaagtttgattcccaatgatnnnnnnnnttgatact |
319 |
Q |
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| T |
4487396 |
ccattggggtctaacgaaagtggttcatgtgcagtgtgtgcgagtgttgtaaaccgcggagtaccaagtttgattcccaatgataaaaaaaattgatact |
4487495 |
T |
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| Q |
320 |
cactatgagcgaagaacaaagaggagaaggtaaaccaaagagctgtgctgagctgaaactctgggttcggttctctctcgagataccaaacaactaacat |
419 |
Q |
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| T |
4487496 |
cactatgagcgaagaacaaagaggagaaggtaaaccaaagagctgtactgagctgaaactctgggttcggttctctctcgagataccaaacaactaacat |
4487595 |
T |
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| Q |
420 |
tgtgtaaatcaagattgcacctgtaacc |
447 |
Q |
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| T |
4487596 |
tgtgtaaatcaagattgcacctgtaacc |
4487623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 312 - 444
Target Start/End: Original strand, 4482491 - 4482641
Alignment:
| Q |
312 |
ttgatactcactatgagcgaagaacaaagaggagaaggtaaaccaaagagctgtgctgagctg------------------aaactctgggttcggttct |
393 |
Q |
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|||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||| ||| || |
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| T |
4482491 |
ttgatactcactatgagcaaagaagagagaagagaaggtaaaccaaagagctgtgctgagctggagcttccagtttccatgaaactctgggttgggtact |
4482590 |
T |
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| Q |
394 |
ctctcgagataccaaacaactaacattgtgtaaatcaagattgcacctgta |
444 |
Q |
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| T |
4482591 |
ctctctagataccaaacaacacacattgtgtaaatcaagattgcacctgta |
4482641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 4482301 - 4482352
Alignment:
| Q |
20 |
atcaatacaagaaagagccatgagaccatcacaactcgagttaagttgctgt |
71 |
Q |
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| T |
4482301 |
atcaatacaagaaagagccatgagaccatcaccactcgagttaagctgctgt |
4482352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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