View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8143_low_12 (Length: 466)

Name: NF8143_low_12
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8143_low_12
NF8143_low_12
[»] scaffold0119 (2 HSPs)
scaffold0119 (12-293)||(22561-22845)
scaffold0119 (370-451)||(22921-23002)
[»] chr2 (11 HSPs)
chr2 (12-293)||(1278246-1278530)
chr2 (370-451)||(1278089-1278170)
chr2 (357-431)||(44966108-44966182)
chr2 (356-431)||(34929279-34929354)
chr2 (356-431)||(32644898-32644973)
chr2 (396-431)||(34504160-34504195)
chr2 (356-430)||(31663481-31663555)
chr2 (365-430)||(20683640-20683705)
chr2 (354-391)||(34242397-34242434)
chr2 (395-431)||(18734565-18734601)
chr2 (357-385)||(27269184-27269212)
[»] chr5 (12 HSPs)
chr5 (354-431)||(14576007-14576084)
chr5 (354-430)||(40298338-40298414)
chr5 (356-429)||(8233975-8234048)
chr5 (354-432)||(1860238-1860317)
chr5 (357-431)||(3938375-3938449)
chr5 (357-431)||(14622535-14622609)
chr5 (354-430)||(30685546-30685622)
chr5 (354-430)||(30721368-30721444)
chr5 (357-431)||(36527395-36527469)
chr5 (391-431)||(3557860-3557900)
chr5 (395-431)||(10020695-10020731)
chr5 (403-431)||(10333781-10333809)
[»] chr3 (8 HSPs)
chr3 (356-430)||(32733594-32733668)
chr3 (357-431)||(53287385-53287459)
chr3 (357-430)||(20378993-20379066)
chr3 (354-431)||(39990778-39990855)
chr3 (356-431)||(24657309-24657384)
chr3 (374-431)||(37311627-37311684)
chr3 (357-430)||(49447642-49447715)
chr3 (354-430)||(42791142-42791218)
[»] chr1 (3 HSPs)
chr1 (357-431)||(15279088-15279162)
chr1 (354-430)||(34710995-34711071)
chr1 (357-431)||(39275820-39275894)
[»] chr4 (12 HSPs)
chr4 (354-431)||(38354254-38354331)
chr4 (354-431)||(53133449-53133526)
chr4 (356-430)||(9319862-9319936)
chr4 (357-431)||(34118986-34119060)
chr4 (354-431)||(31216987-31217064)
chr4 (354-429)||(55323024-55323099)
chr4 (354-404)||(41236099-41236149)
chr4 (354-431)||(966673-966750)
chr4 (397-430)||(18371073-18371106)
chr4 (354-431)||(26740740-26740817)
chr4 (354-431)||(49250122-49250199)
chr4 (355-431)||(45088296-45088372)
[»] chr7 (3 HSPs)
chr7 (354-432)||(48046962-48047040)
chr7 (356-431)||(43951962-43952037)
chr7 (357-420)||(48634005-48634068)
[»] chr8 (2 HSPs)
chr8 (365-431)||(6108728-6108794)
chr8 (357-416)||(36434658-36434717)
[»] chr6 (2 HSPs)
chr6 (399-433)||(2588763-2588797)
chr6 (361-431)||(17515418-17515488)
[»] scaffold0007 (1 HSPs)
scaffold0007 (397-430)||(176325-176358)


Alignment Details
Target: scaffold0119 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 293
Target Start/End: Original strand, 22561 - 22845
Alignment:
Q  12 gagatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaagagaggttgca-attggtggtagtggtgttgtttcgtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||| | |||||| ||||||||    
T  22561 gagatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaagagaggttgcagagagttggaattggtgt-gtttcgtt 22659  T
Q  111 gtggtgctattttgcagaatcgtaatttggtatcaactcaactatagtctctctcacctattctattcgagttcgatccggtttctctatttcgggtcaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  22660 gtggtgctattttgcagaatcgtaatttggtatcaactcaactatagtctctctcccttattctattcgggttcgatccggtttctctatttcgggtcaa 22759  T
Q  211 accatcctacttcttcatttctaaatatttttaaagagta---ataaacaaatggatagtgttaacgtgtacccttaaggcaaccc 293  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||    
T  22760 accatcctacttcttcatttctaaatatttttaaagagtactgataaacaaatgggtagtgttaacgtgtacccttaaggcaaccc 22845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 370 - 451
Target Start/End: Original strand, 22921 - 23002
Alignment:
Q  370 caataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttcattttcctaaataaatatat 451  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22921 caataaattatttatatatttgccatattaatttgtgtcttaagggcacaaattaacatttcattttcctaaataaatatat 23002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 1278530 - 1278246
Alignment:
Q  12 gagatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaagagaggttgca-attggtggtagtggtgttgtttcgtt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||| | |||||| ||||||||    
T  1278530 gagatgaaaaatgaaagaaatagagataagttttgagacatacatggtggtgcgcgagcgaagagaggttgcagagagttggaattggtgt-gtttcgtt 1278432  T
Q  111 gtggtgctattttgcagaatcgtaatttggtatcaactcaactatagtctctctcacctattctattcgagttcgatccggtttctctatttcgggtcaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||    
T  1278431 gtggtgctattttgcagaatcgtaatttggtatcaactcaactatagtctctctcccttattctattcgggttcgatccggtttctctatttcgggtcaa 1278332  T
Q  211 accatcctacttcttcatttctaaatatttttaaagagta---ataaacaaatggatagtgttaacgtgtacccttaaggcaaccc 293  Q
    ||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||    
T  1278331 accatcctacttcttcatttctaaatatttttaaagagtactgataaacaaatgggtagtgttaacgtgtacccttaaggcaaccc 1278246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 370 - 451
Target Start/End: Complemental strand, 1278170 - 1278089
Alignment:
Q  370 caataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttcattttcctaaataaatatat 451  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1278170 caataaattatttatatatttgccatattaatttgtgtcttaagggcacaaattaacatttcattttcctaaataaatatat 1278089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 44966108 - 44966182
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||||||| |||||||||| || ||||||||    ||||||||||| ||||||||||||| ||||||||||    
T  44966108 aatgcacacattccaataaattaattctatatttgaatcattaacttgtgccttaagggcacaagttaacatttc 44966182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 431
Target Start/End: Original strand, 34929279 - 34929354
Alignment:
Q  356 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||| |||| ||||| ||||||| || ||||| | ||| |||||||| ||||||||||||| ||||||||||    
T  34929279 taatgcacgcattccaatacattatttctacatttggcttataaacttgtgccttaagggcacaagttaacatttc 34929354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 431
Target Start/End: Original strand, 32644898 - 32644973
Alignment:
Q  356 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||  |||| ||||| ||||||| |||||||| | | | |||||||||||||| ||||||| ||||||||||    
T  32644898 taatgcatgcattccaatacattatttttatatttggcttctaaacttgtgtcttaaaggcacaagttaacatttc 32644973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 431
Target Start/End: Complemental strand, 34504195 - 34504160
Alignment:
Q  396 attaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||||||||||||||||||| ||||||||||    
T  34504195 attaacttgtgtcttaagggcacaagttaacatttc 34504160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 31663481 - 31663555
Alignment:
Q  356 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||||||||| ||||||| |||||||||||||||   ||||||||||   |||| | ||||| |||||||||    
T  31663481 taatgcacacattccaataaactatttatatatttgtttaattaacttgtactttaatgacacaagttaacattt 31663555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 430
Target Start/End: Original strand, 20683640 - 20683705
Alignment:
Q  365 catttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    |||| ||||| ||||||| || ||||||| | | ||||||| |||||||||||||| |||||||||    
T  20683640 cattccaatacattatttctacatttgtcttctaaacttgtatcttaagggcacaagttaacattt 20683705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 34242434 - 34242397
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttg 391  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  34242434 tgtaatgcatacattccaataaattatttatatatttg 34242397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 431
Target Start/End: Original strand, 18734565 - 18734601
Alignment:
Q  395 tattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  18734565 tattaacttgtgtcttaatggcacaagttaacatttc 18734601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 385
Target Start/End: Original strand, 27269184 - 27269212
Alignment:
Q  357 aatgcacacatttcaataaattatttata 385  Q
    |||||||||||||||||||||||||||||    
T  27269184 aatgcacacatttcaataaattatttata 27269212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 14576007 - 14576084
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||||||||||| ||||| ||||| |||||||  | ||||||||| |||||||||||||||||||||||||||    
T  14576007 tgtaatgcacacatttcgataaactatttctatattttacttattaacttatgtcttaagggcacaaattaacatttc 14576084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 40298338 - 40298414
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||| |||||||  |||||||||||| |||||||  | ||||||||||| ||||||| ||||||||||||||||    
T  40298338 tgtaatgtacacattctaataaattatttttatatttaacttattaacttgtatcttaagagcacaaattaacattt 40298414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 8234048 - 8233975
Alignment:
Q  356 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatt 429  Q
    ||||||||||| | ||||||||||||| | ||||||   |||||| ||||||||||||||||||| ||||||||    
T  8234048 taatgcacacaatccaataaattatttctttatttgaattattaatttgtgtcttaagggcacaagttaacatt 8233975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 432
Target Start/End: Original strand, 1860238 - 1860317
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatat-atttgtcatattaacttgtgtcttaagggcacaaattaacatttca 432  Q
    ||||||||||||||||||||||||||||| ||| |||||    |||||||||||  |||||||||||| ||| |||||||    
T  1860238 tgtaatgcacacatttcaataaattatttttataatttgatgcattaacttgtgctttaagggcacaatttagcatttca 1860317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 3938449 - 3938375
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||| ||||| ||||||||||||| |||||||     |||||||||||||||||| ||||||||||| |||||    
T  3938449 aatgcatacattccaataaattatttctatatttaaatcattaacttgtgtcttaagagcacaaattaatatttc 3938375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 14622535 - 14622609
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||| || ||||||||||||| ||||||||    |||||||||||| ||||| |||||||||| ||||||    
T  14622535 aatgcacaccttccaataaattatttctatatttgaatcattaacttgtgttttaagagcacaaattagcatttc 14622609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 30685622 - 30685546
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||||||| ||||||||||| ||||| |||||||||   ||||  || ||||||||| |||||| |||||||||    
T  30685622 tgtaatgcacatatttcaataaactatttctatatttgtttcattagtttatgtcttaagagcacaagttaacattt 30685546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 430
Target Start/End: Complemental strand, 30721444 - 30721368
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||||||||||||||||||| ||||| |||||||||   ||||  ||||| ||||| | ||||| |||||||||    
T  30721444 tgtaatgcacacatttcaataaactatttctatatttgtttcattagtttgtgccttaaagacacaagttaacattt 30721368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 36527469 - 36527395
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||||| | ||||||| ||||| ||||||||  | ||||||||||| | | ||||||||| ||||||||||    
T  36527469 aatgcacacactccaataaactatttctatatttgatacattaacttgtgccctcagggcacaacttaacatttc 36527395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 391 - 431
Target Start/End: Original strand, 3557860 - 3557900
Alignment:
Q  391 gtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||| |||||||||| ||||||||||||| ||||||||||    
T  3557860 gtcatgttaacttgtgccttaagggcacaagttaacatttc 3557900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 431
Target Start/End: Complemental strand, 10020731 - 10020695
Alignment:
Q  395 tattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||||||||||||||||||||| | ||||||||    
T  10020731 tattaacttgtgtcttaagggcacaagtcaacatttc 10020695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 431
Target Start/End: Complemental strand, 10333809 - 10333781
Alignment:
Q  403 tgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||||||||||||||||||||||||    
T  10333809 tgtgtcttaagggcacaaattaacatttc 10333781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 32733668 - 32733594
Alignment:
Q  356 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||||| ||| ||||| ||||||| || ||||| | ||| ||||||||||||||||||||||||||||||||    
T  32733668 taatgcacagattccaatacattatttctacatttggcttataaacttgtgtcttaagggcacaaattaacattt 32733594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 53287459 - 53287385
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||||||| |||||||| |||| ||||||||    ||||||||||| ||||||||||||| ||||||||||    
T  53287459 aatgcacacattccaataaatgatttctatatttgaatcattaacttgtggcttaagggcacaagttaacatttc 53287385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 430
Target Start/End: Complemental strand, 20379066 - 20378993
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||||||||  ||||| |||||| ||||||||    |||||||||||| ||||||||| ||||||||||||    
T  20379066 aatgcacacattctaataatttatttctatatttgaatcattaacttgtgtattaagggcataaattaacattt 20378993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 39990778 - 39990855
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||| ||||||||||||||||||||||  || ||||    ||||||||||||||| ||||||||| ||| ||||||    
T  39990778 tgtaattcacacatttcaataaattattttcatctttgattcattaacttgtgtcttgagggcacaagttagcatttc 39990855  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 431
Target Start/End: Original strand, 24657309 - 24657384
Alignment:
Q  356 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||||||| |||||||| |||| ||||||||    ||| | || |||||||||||||||||||| ||||||    
T  24657309 taatgcacacattccaataaataatttctatatttgaatcatttatttatgtcttaagggcacaaattatcatttc 24657384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 431
Target Start/End: Complemental strand, 37311684 - 37311627
Alignment:
Q  374 aaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||||||  ||||||  ||||||||||| |||| ||||||||||||| |||||    
T  37311684 aaattatttatacttttgtctcattaacttgtgccttacgggcacaaattaatatttc 37311627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 49447642 - 49447715
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    |||||||||||| |||||| |||||| ||||||||    ||||| ||||||||||| ||||| | |||||||||    
T  49447642 aatgcacacattccaataatttatttttatatttgaatcattaatttgtgtcttaaaggcacgagttaacattt 49447715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 42791142 - 42791218
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||||||||||| | |||||||| || |||||| |    ||||||||||| |||||||||| || |||||||||    
T  42791142 tgtaatgcacacattcccataaattacttttatattcgatgcattaacttgtgccttaagggcaaaagttaacattt 42791218  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 15279088 - 15279162
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||||||  |||||||||||| ||||||||    |||||||||||||||||||||| |||||||||||||    
T  15279088 aatgcacacattctaataaattatttctatatttgaatcattaacttgtgtcttaagggcagaaattaacatttc 15279162  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 34710995 - 34711071
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    |||||| ||||||||||||| |  ||||| |||||||||   ||||||||||||| ||||||||||| |||||||||    
T  34710995 tgtaatacacacatttcaatgagctatttctatatttgtttcattaacttgtgtcataagggcacaagttaacattt 34711071  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 431
Target Start/End: Complemental strand, 39275894 - 39275820
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||||||||||||| |||||||||| ||||    |||||||||||  ||||| |||||| ||||||||||    
T  39275894 aatgcacacatttcaataatttatttatatgtttgaatcattaacttgtgctttaagcgcacaagttaacatttc 39275820  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 38354331 - 38354254
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||| ||||||||||||||||||| ||||||||    |||||||||| |||||||| ||||| ||||||||||    
T  38354331 tgtaatgcatacatttcaataaattatttctatatttgattcattaacttgtatcttaaggacacaagttaacatttc 38354254  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 53133526 - 53133449
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||||| ||| |||| | |||||| |||||||||   ||||||||||| ||||||||||||| ||||||||||    
T  53133526 tgtaatgcacatattccaatgagttatttctatatttgtttcattaacttgtgccttaagggcacaagttaacatttc 53133449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 430
Target Start/End: Complemental strand, 9319936 - 9319862
Alignment:
Q  356 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||||||||| ||||||||||||| ||||||||    ||||| ||||| ||||||||||||  |||||||||    
T  9319936 taatgcacacattgcaataaattatttttatatttgattaattaagttgtgccttaagggcacacgttaacattt 9319862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 34118986 - 34119060
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||| |||||||||||   ||| ||||||||    ||||||||||||||| ||||||||||||||||||||    
T  34118986 aatgcacatatttcaataaaaattttctatatttgaatcattaacttgtgtcttgagggcacaaattaacatttc 34119060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 31216987 - 31217064
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||| ||||| || |||||||  |||| ||||||||   |||||||||||||||||||||||||| ||| ||||||    
T  31216987 tgtaatacacaccttccaataaaccatttctatatttgatttattaacttgtgtcttaagggcacaagttagcatttc 31217064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 55323024 - 55323099
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatt 429  Q
    ||||||||||| ||| ||||||||||||| ||||||||    | ||||||||| ||||||||||||| ||| ||||    
T  55323024 tgtaatgcacaaattccaataaattatttctatatttgattcactaacttgtgccttaagggcacaagttagcatt 55323099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 404
Target Start/End: Original strand, 41236099 - 41236149
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttg 404  Q
    |||||||||||||||| |||||||||||| ||||||||   ||||||||||    
T  41236099 tgtaatgcacacattttaataaattatttctatatttgatttattaacttg 41236149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 966750 - 966673
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||| ||||||||||||||| ||||| ||||||||    ||||||||||||||| ||| | ||| ||| ||||||    
T  966750 tgtaatgtacacatttcaataaactatttctatatttgattcattaacttgtgtcttgaggacgcaagttagcatttc 966673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Complemental strand, 18371106 - 18371073
Alignment:
Q  397 ttaacttgtgtcttaagggcacaaattaacattt 430  Q
    |||||||||||||||||||||||| |||||||||    
T  18371106 ttaacttgtgtcttaagggcacaagttaacattt 18371073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 431
Target Start/End: Complemental strand, 26740817 - 26740740
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||| |||| ||| ||||||| ||||| ||||||||    |||||| ||||||||||| |||||| ||||||||||    
T  26740817 tgtaatacacatattccaataaaatatttttatatttgattcattaacgtgtgtcttaagagcacaagttaacatttc 26740740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 49250122 - 49250199
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||| || ||||||||||||| ||||| ||||||||   ||||||| |||  |||||||| |||| ||||||||||    
T  49250122 tgtaatacagacatttcaataaactatttttatatttgatgtattaacctgtaccttaagggtacaagttaacatttc 49250199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 431
Target Start/End: Original strand, 45088296 - 45088372
Alignment:
Q  355 gtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||||||||| ||||||  ||||| ||||||||   |||||||| ||| ||||||  ||||| ||||||||||    
T  45088296 gtaatgcacacattccaataacctatttttatatttgatttattaactcgtgccttaagaacacaagttaacatttc 45088372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 354 - 432
Target Start/End: Original strand, 48046962 - 48047040
Alignment:
Q  354 tgtaatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttca 432  Q
    ||||||||||||||| |||||| | |||| ||||||||   |||||||||||| ||||||||||||| ||| |||||||    
T  48046962 tgtaatgcacacattccaataattaatttctatatttgatttattaacttgtgccttaagggcacaagttagcatttca 48047040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 431
Target Start/End: Original strand, 43951962 - 43952037
Alignment:
Q  356 taatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    ||||||||||||| ||||| ||||||| || ||||||| | | ||||||||||||||   ||||| ||||||||||    
T  43951962 taatgcacacattccaatacattatttctacatttgtcttctaaacttgtgtcttaaaatcacaagttaacatttc 43952037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Original strand, 48634005 - 48634068
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaa 420  Q
    |||| ||||||| ||||||| ||||| |||||||    ||||||||||||||||||||||||||    
T  48634005 aatgtacacattccaataaactatttttatattttatttattaacttgtgtcttaagggcacaa 48634068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 431
Target Start/End: Complemental strand, 6108794 - 6108728
Alignment:
Q  365 catttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||||||||| ||||||| |||||||| | | | ||||||||| |||||||||||| ||||||||||    
T  6108794 catttcaatacattatttctatatttgccttctaaacttgtgttttaagggcacaagttaacatttc 6108728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 416
Target Start/End: Complemental strand, 36434717 - 36434658
Alignment:
Q  357 aatgcacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggc 416  Q
    |||||||||||||||||||||||||| ||||||||    |||||| |||| |||||||||    
T  36434717 aatgcacacatttcaataaattatttttatatttgaatcattaacatgtgccttaagggc 36434658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 399 - 433
Target Start/End: Complemental strand, 2588797 - 2588763
Alignment:
Q  399 aacttgtgtcttaagggcacaaattaacatttcat 433  Q
    |||||||||||||||||||||| ||||||||||||    
T  2588797 aacttgtgtcttaagggcacaagttaacatttcat 2588763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 431
Target Start/End: Original strand, 17515418 - 17515488
Alignment:
Q  361 cacacatttcaataaattatttatatatttgtcatattaacttgtgtcttaagggcacaaattaacatttc 431  Q
    |||| |||||||||||||||||| |||||||    ||||| |||| |||| ||||||||| ||||||||||    
T  17515418 cacatatttcaataaattatttacatatttgaatcattaaattgtatcttgagggcacaagttaacatttc 17515488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 430
Target Start/End: Original strand, 176325 - 176358
Alignment:
Q  397 ttaacttgtgtcttaagggcacaaattaacattt 430  Q
    ||||||||||||||||||| ||||||||||||||    
T  176325 ttaacttgtgtcttaagggtacaaattaacattt 176358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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