View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_14 (Length: 459)
Name: NF8143_low_14
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 9161631 - 9161998
Alignment:
| Q |
1 |
acatagaattagttgcattatcatacttcattttccatcacaatagttgcatgcagatttcttttctatgtctattgtgaaatgattccatgactctgag |
100 |
Q |
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| T |
9161631 |
acatagaactagttgcattatcatacttcattttccatcacaatagttgcatgcagatttcttttctatgtctattgtgaaatgattccatgactctgag |
9161730 |
T |
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| Q |
101 |
cagttcttatgcttcttaaagcgaggaggtttgcactattagagactgtgggtataggggtagaaactgcatgcnnnnnnncaagaaattaactggttta |
200 |
Q |
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| T |
9161731 |
cagttcttatgcttcttaaagcgaggaggtttgcactattagagactgtgggtataggggtagaaactgcatgctttttttcaagaaattaactggttta |
9161830 |
T |
|
| Q |
201 |
agctgtttatgcaaatgcattagtgtaacaccatctccatctccaataaaacactctgaatctcttttgtcgagaatggcaaactcataaatggtcaaca |
300 |
Q |
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| T |
9161831 |
agctgtttatgcaaatgcattagtgtaacaccatctccatctccaataaaacactctgaatctcttttgtcgagaatggcaaactc--aaatggtcaaca |
9161928 |
T |
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| Q |
301 |
actcaccataattgataccaaactcatcatggcatcttccaacacaatcaatcactgggtattacatatt |
370 |
Q |
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| T |
9161929 |
actcaccataattgataccaaactcatcatggcatcttccaacacaatcaatcactgggtattacatatt |
9161998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 9149001 - 9149078
Alignment:
| Q |
182 |
caagaaattaactggtttaagctgtttatgcaaatgcattagtgtaacaccatctccatctccaataaaacactctgaa |
260 |
Q |
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| T |
9149001 |
caaggaattaactggtataagttgtctatgcaa-tggattagtgtaacaccatctccgtgtctaatacaacactctgaa |
9149078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 441
Target Start/End: Original strand, 9149229 - 9149336
Alignment:
| Q |
334 |
atcttccaacacaatcaatcactgggtattacatatttacttctctcttaggactacatagatggaaccattagttatctttttcttggagattgtcctc |
433 |
Q |
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| T |
9149229 |
atcttccaacacaatcaattactggagattgcaaagttacttctctctcaggataacataactggatccattggttttctgtatcttagagattctcttc |
9149328 |
T |
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| Q |
434 |
aggatatt |
441 |
Q |
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|||||||| |
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| T |
9149329 |
aggatatt |
9149336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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