View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_16 (Length: 404)
Name: NF8143_low_16
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 16 - 389
Target Start/End: Original strand, 40941927 - 40942300
Alignment:
| Q |
16 |
cctgtgctttcatatcaacaatatgtttcaaagttataatcttatgaaattatttcaaaatatatcatcatcacatcatgtgcttaaaaatgaaactctg |
115 |
Q |
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| T |
40941927 |
cctgtgctgtcatatcaacaatatgtttcaaagttataatcttatgaaattatttcaaaatatatcatcatcacatcatgtgcttaaaaatgaaactctg |
40942026 |
T |
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| Q |
116 |
gggacaatatattgcttcaggctattgttttgaaggtactgcttatatttacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagc |
215 |
Q |
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| T |
40942027 |
gggacaatatattgcttcaggctattgttttgaaggtaatgcttatatttacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagc |
40942126 |
T |
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| Q |
216 |
cctttgatccacataggcataacgcagtcttcaaagttcctgacggttccaagcccccaggcactgttgcagctgtgctgaaggtaatttagatcattgc |
315 |
Q |
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| T |
40942127 |
cctttgatccacataggcataacgcagtcttcaaagttcctgacggttccaagcccccaggcactgttgcagctgtgctgaaggtaatttagatcattgc |
40942226 |
T |
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| Q |
316 |
ttgtggaaggacatgttctttttcattccaattttaaaacttgtttcaatcaataaaatcttgatgtgctattt |
389 |
Q |
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| T |
40942227 |
ttgtggaaggacatgttctttttccttccaattttaaaacttgtttcaatcaataaaatcttgatgtgctattt |
40942300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 301
Target Start/End: Original strand, 21507090 - 21507227
Alignment:
| Q |
164 |
ttacaggcacttaaaaagtttggtgtagaaaaatttgaccctacaaatgagccctttgatccacataggcataacgcagtcttcaaagttcctgacggtt |
263 |
Q |
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| T |
21507090 |
ttacaggtacttaaaaagcacggtgttgaaaaatatgatcctacaaatgaaccatttgatccaaacaggcataatgccatcttccaaatacccgatgctt |
21507189 |
T |
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| Q |
264 |
ccaagcccccaggcactgttgcagctgtgctgaaggta |
301 |
Q |
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| T |
21507190 |
ccaagcctccaggcactgttggagttgttctcaaggta |
21507227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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