View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8143_low_17 (Length: 389)
Name: NF8143_low_17
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_17 |
 | |
|
| [»] scaffold0015 (2 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 5381724 - 5381378
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5381724 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
5381625 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5381624 |
accgagatgaaccagaaaaagaagaagttttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
5381525 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5381524 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagt |
5381425 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5381424 |
ggtagttgtgaaaatgtggtgtcgaactacatggtagagaagttaga |
5381378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 13721491 - 13721145
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13721491 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
13721392 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13721391 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgttgatcatggcgagtctctggtgatcagacgaagcct |
13721292 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||| ||| |
|
|
| T |
13721291 |
acacgcgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactactggaaaggtttgtgatgttataatagacagt |
13721192 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13721191 |
ggtagttgtgaaaatgtggtgtcgaactacatggtagagaagttaga |
13721145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 24341682 - 24341603
Alignment:
| Q |
185 |
tgatcagacgaagcctacacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcacc |
264 |
Q |
| |
|
|||||| | |||| ||||||| ||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||| |
|
|
| T |
24341682 |
tgatcataggaaggctacacatgatgtcagcacaagaagagcattacttgaggaaaaacatttttcatactcgttgcacc |
24341603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 5381273 - 5381242
Alignment:
| Q |
345 |
agaagtatcaagatcaagtttggtgtgatgtc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5381273 |
agaagtatcaagatcaagtttggtgtgatgtc |
5381242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 18965039 - 18964972
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaagg |
68 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| || | ||||||||||||||| ||||| |
|
|
| T |
18965039 |
aaatgtcaagggtttggacatattgcttctgattgtccaaatcgcaaaaccatcaccatcattaaagg |
18964972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 27906 - 27560
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27906 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
27807 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27806 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
27707 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
27706 |
acacgcgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagt |
27607 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27606 |
ggtagttgtgaaaatgtggtgtcgaactacatggtagagaagttaga |
27560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 27455 - 27424
Alignment:
| Q |
345 |
agaagtatcaagatcaagtttggtgtgatgtc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
27455 |
agaagtatcaagatcaagtttggtgtgatgtc |
27424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 88183 - 88529
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88183 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
88282 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88283 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
88382 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
88383 |
acacgcgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagt |
88482 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
88483 |
ggtagttgtgaaaatgtggtgtcgaactacatggtagagaagttaga |
88529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 88634 - 88665
Alignment:
| Q |
345 |
agaagtatcaagatcaagtttggtgtgatgtc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
88634 |
agaagtatcaagatcaagtttggtgtgatgtc |
88665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 11713037 - 11713383
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11713037 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
11713136 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11713137 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
11713236 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
11713237 |
acacgcgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagt |
11713336 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11713337 |
ggtagttgtgaaaatgtggtgtcgaactacatggtagagaagttaga |
11713383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 8 - 347
Target Start/End: Original strand, 13162253 - 13162592
Alignment:
| Q |
8 |
aaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaaaccgaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||| || || |
|
|
| T |
13162253 |
aaggttttggacatatagcttcaaattgtccaacccgaagaaccatcaccatcatcaaaggagaagcttatgaagaagatgaagagaaaacaaatcggga |
13162352 |
T |
|
| Q |
108 |
tgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcctacacacg |
207 |
Q |
| |
|
||||| |||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
13162353 |
tgaacatgaaaaagatgtagagttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgttcagacgaagcctacacgcg |
13162452 |
T |
|
| Q |
208 |
atgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagtggtagtt |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13162453 |
atgtcagcccaagaagagcattggttgacgaaaaacatcatccatactcgttgcaccactgctggaaaagtttgtgatattataatagatagtggtagtt |
13162552 |
T |
|
| Q |
308 |
gtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
13162553 |
gtgaaaatgtggtgtcgaactacatggtagagaagttaga |
13162592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 11713488 - 11713519
Alignment:
| Q |
345 |
agaagtatcaagatcaagtttggtgtgatgtc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
11713488 |
agaagtatcaagatcaagtttggtgtgatgtc |
11713519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 376
Target Start/End: Original strand, 13162697 - 13162728
Alignment:
| Q |
345 |
agaagtatcaagatcaagtttggtgtgatgtc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13162697 |
agaagtatcaagatcaagtttggtgtgatgtc |
13162728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 42377055 - 42377401
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42377055 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
42377154 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42377155 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcct |
42377254 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42377255 |
acacgcgatgtcagctcaagaagagtattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagt |
42377354 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42377355 |
ggtagttgtgaaaatgtggtgtcgaactacatggtagagaagttaga |
42377401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 14475254 - 14474908
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14475254 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
14475155 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14475154 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
14475055 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
14475054 |
acacgcgatgtcagctcaagaagagcattggttgagcaaaaacatttttcatactcgttgcaccactgctggaaaagtttgtgatgttataatagacagt |
14474955 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
14474954 |
ggtagttgtgaaaatgtggtgtcgaactacatggtagagaatttaga |
14474908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 2795504 - 2795158
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2795504 |
aaatttcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
2795405 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2795404 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctagtgatcagacgaagcct |
2795305 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
|||| ||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| |
|
|
| T |
2795304 |
acacgcgatgtcagctcaagaagaacatttgttgaggaaaaacattttccatactcgttgcaccactgccggaaaagtttgtgatgttataatagacagt |
2795205 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagttaga |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2795204 |
ggtagttgtgaaaatgtggtgtcgaactacatggtggagaagttaga |
2795158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 376
Target Start/End: Complemental strand, 14474803 - 14474772
Alignment:
| Q |
345 |
agaagtatcaagatcaagtttggtgtgatgtc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
14474803 |
agaagtatcaagatcaagtttggtgtgatgtc |
14474772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 16776148 - 16775804
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16776148 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaacgatcaccatcatcaaaggagaagcttatgaagatgttgatgaggaaacaa |
16776049 |
T |
|
| Q |
101 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgagtctctggtgatcagacgaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
16776048 |
accgagatgaaccagaaaaagaagaagtgttagagccaatttatgatgaagagctcattgttgctgatcatggcgaatctctagtgataagacgaagcct |
16775949 |
T |
|
| Q |
201 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaatattttccatactcgttgcaccattgctggaaaagtttgtgatgttataatagatagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16775948 |
acacacgatgtcagctcaagaagagcattggttgaggaaaaacattttccatactcgttgcaccactgctggaaaagtttgtgatgttataatagatagt |
16775849 |
T |
|
| Q |
301 |
ggtagttgtgaaaatgtggtgtcgaactacatggtaaagaagtta |
345 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16775848 |
ggtagttttgaaaatgtggtgtcgaactacatggtagagaagtta |
16775804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 373
Target Start/End: Complemental strand, 16775697 - 16775669
Alignment:
| Q |
345 |
agaagtatcaagatcaagtttggtgtgat |
373 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16775697 |
agaagtatcaagatcaagtttggtgtgat |
16775669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 89631 - 89698
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaagg |
68 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| || | ||||||||||||||||||||| |
|
|
| T |
89631 |
aaatgtcaagggtttggacatattgcttctgattgtccaaatcgcaaaaccatcaccatcatcaaagg |
89698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 45163464 - 45163531
Alignment:
| Q |
1 |
aaatgtcaaggttttggacatatagcttcaaattgtccaacacgaagaaccatcaccatcatcaaagg |
68 |
Q |
| |
|
||||||||||| ||||||||||| ||||| ||||||||| || | ||||||||||||||||||||| |
|
|
| T |
45163464 |
aaatgtcaagggtttggacatattgcttctgattgtccaaatcgcaaaaccatcaccatcatcaaagg |
45163531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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