View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8143_low_19 (Length: 383)

Name: NF8143_low_19
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8143_low_19
NF8143_low_19
[»] chr7 (4 HSPs)
chr7 (1-214)||(3597869-3598082)
chr7 (305-367)||(3598099-3598161)
chr7 (232-367)||(27962625-27962758)
chr7 (159-211)||(27962549-27962602)
[»] chr3 (4 HSPs)
chr3 (1-151)||(2251888-2252038)
chr3 (1-155)||(2252444-2252598)
chr3 (61-196)||(49233862-49233997)
chr3 (103-196)||(49234475-49234569)
[»] chr5 (1 HSPs)
chr5 (232-367)||(4356866-4357001)
[»] chr2 (1 HSPs)
chr2 (57-367)||(24455633-24455940)
[»] chr8 (4 HSPs)
chr8 (232-367)||(14838932-14839065)
chr8 (232-284)||(43227946-43227998)
chr8 (103-198)||(43228035-43228130)
chr8 (159-211)||(14839088-14839141)
[»] chr1 (2 HSPs)
chr1 (103-196)||(50862480-50862573)
chr1 (232-284)||(25433734-25433786)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3597869 - 3598082
Alignment:
Q  1 cattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaa 100  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3597869 cattgttgcttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccaccaa 3597968  T
Q  101 ctgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcacaaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| |    
T  3597969 ctgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattacttcaaaccagctccaaatagttaagcaaaaaca 3598068  T
Q  201 ttgaatatgaatat 214  Q
    ||||||||||||||    
T  3598069 ttgaatatgaatat 3598082  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 305 - 367
Target Start/End: Original strand, 3598099 - 3598161
Alignment:
Q  305 aagcatgaaatatggtggaaataaagaaagaaatataagaaataacagacaaagtagtagaaa 367  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  3598099 aagcatgaaatatagaggaaataaagaaagaaatataagaaataacagacaaagtagtagaaa 3598161  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 367
Target Start/End: Original strand, 27962625 - 27962758
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaaga 331  Q
    |||||||||||||| ||||||| |||| ||||||||| ||| ||| ||||||| ||  |||| || |||| | ||| ||||||||  | |||||| |||     
T  27962625 aagcatatattttggagttatgctaactaaggctaatgcataatttaacaaaaataggttgatactcaataagaagaatgaaata--gaggaaatgaagc 27962722  T
Q  332 aagaaatataagaaataacagacaaagtagtagaaa 367  Q
    |||||||| | |||| |||  |||||||||||||||    
T  27962723 aagaaatagatgaaaaaactaacaaagtagtagaaa 27962758  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 27962549 - 27962602
Alignment:
Q  159 gaaaattaccttaaaccagctccaaatagttaagcacaaaaat-tgaatatgaa 211  Q
    |||||||||||| |||||||||  |||||||||||||||| || ||||||||||    
T  27962549 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaa 27962602  T

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Target: chr3 (Bit Score: 131; Significance: 7e-68; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 2252038 - 2251888
Alignment:
Q  1 cattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaa 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2252038 cattgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaa 2251939  T
Q  101 ctgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaa 151  Q
    |||||||||||||||||||||||||||||||| | ||||| ||||||||||    
T  2251938 ctgaaaaccagctctgaattatgcagaaaaccgctaggaatttgctctgaa 2251888  T

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Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 2252598 - 2252444
Alignment:
Q  1 cattgctgcttttaaatactttatgcgtagaggttgtcaaggggcggaagaaacaactgcagtaccgaaacacctctgttgcacaatatcagtccacaaa 100  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    |||||||||    
T  2252598 cattgctacttttaaatactttatgcgtagagggtgtcaaggggcggaagaaacaactgcagtaccgaaacacctatgttgcacaattgatgtccacaaa 2252499  T
Q  101 ctgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattat 155  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2252498 ctgaaaaccagctctgaattatgcagaaaaccaccaggaatttgctctgaattat 2252444  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 49233862 - 49233997
Alignment:
Q  61 agtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcaga 160  Q
    |||||| ||||||  ||| ||||| | || ||||||||  | ||||||||||||| |||||||||||||| ||||  || || ||||  |||||| ||||    
T  49233862 agtaccaaaacactgctgctgcactacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcaga 49233961  T
Q  161 aaattaccttaaaccagctccaaatagttaagcaca 196  Q
    |||||||||| |||||||||  ||||||||||||||    
T  49233962 aaattaccttgaaccagctctgaatagttaagcaca 49233997  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 49234475 - 49234569
Alignment:
Q  103 gaaaaccagctctgaattatgca-gaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcaca 196  Q
    ||||||||||||| ||||||||| ||||| ||||  || || ||||  |||||| || ||||||||||| |||||||||  |||| |||||||||    
T  49234475 gaaaaccagctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaataattaagcaca 49234569  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 232 - 367
Target Start/End: Complemental strand, 4357001 - 4356866
Alignment:
Q  232 aagcatatattttgaagt--tatggtaacaaaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaa 329  Q
    |||||||||||||| |||  ||||||||||||||||||||||||||||||||||| |||||| | ||| | ||||||||||||||||  | |||||||||    
T  4357001 aagcatatattttggagtgttatggtaacaaaggctaatacattattcaacaaaaatatatttatacatagtcataagcatgaaata--gaggaaataaa 4356904  T
Q  330 gaaagaaatataagaaataacagacaaagtagtagaaa 367  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4356903 gaaagaaatataagaaataacagacaaagtagtagaaa 4356866  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 367
Target Start/End: Complemental strand, 24455940 - 24455633
Alignment:
Q  57 ctgcagtaccgaaacacctctgttgcacaatatcagtccacaaactgaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattatt 156  Q
    ||||| |||| ||||||  ||||||||  | || ||||||||  | ||||||||||||| |||||||||||||| ||||  || || ||||  ||||||     
T  24455940 ctgcaataccaaaacactgctgttgcattacattagtccacatgccgaaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatg 24455841  T
Q  157 cagaaaattaccttaaaccagctccaaatagttaagcacaaaaattgaatatgaatatnnnnnnnnnncattgca-aagcatatattttgaagttatggt 255  Q
    |||||||||||||| |||||||||  ||||||||||||| | |  || ||||||| ||          |||| || |||||||||||||| || |||| |    
T  24455840 cagaaaattaccttgaaccagctctgaatagttaagcac-acatctgtatatgaaaat-aaagaaacacatttcataagcatatattttggagctatgct 24455743  T
Q  256 aacaaaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaagaaagaaatataagaaataacagaca 355  Q
    ||| ||||||||| ||| ||||||||||| ||   ||| || |||||| ||||||||||||  | |||||| ||| |||||||| | ||||||||  ||     
T  24455742 aactaaggctaatgcataattcaacaaaaataggatgatactcaatcagaagcatgaaata--gaggaaatgaagcaagaaatagatgaaataactaacg 24455645  T
Q  356 aagtagtagaaa 367  Q
    ||||||||||||    
T  24455644 aagtagtagaaa 24455633  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 232 - 367
Target Start/End: Complemental strand, 14839065 - 14838932
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaattatattgacacacaatcataagcatgaaatatggtggaaataaaga 331  Q
    |||||||||||||| ||||||| |||| ||||||||| ||| ||| ||||||| ||  |||| || |||| | ||| ||||||||  | |||||| |||     
T  14839065 aagcatatattttggagttatgctaactaaggctaatgcataatttaacaaaaataggttgatactcaataagaagaatgaaata--gaggaaatgaagc 14838968  T
Q  332 aagaaatataagaaataacagacaaagtagtagaaa 367  Q
    |||||||| | |||| |||  |||||||||||||||    
T  14838967 aagaaatagatgaaaaaactaacaaagtagtagaaa 14838932  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 43227998 - 43227946
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaa 284  Q
    |||||||||||||| ||||||| |||| ||||||||| ||| |||||||||||    
T  43227998 aagcatatattttggagttatgctaaccaaggctaatgcataattcaacaaaa 43227946  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 43228130 - 43228035
Alignment:
Q  103 gaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcacaaa 198  Q
    |||| ||| |||| |||||||||||||| ||||  || ||  |||  |||||| |||||||||||||| ||||| |||  ||||||||||||||||    
T  43228130 gaaagccaactctaaattatgcagaaaatcaccccgatctcactccaaattatgcagaaaattaccttgaaccaactctgaatagttaagcacaaa 43228035  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 14839141 - 14839088
Alignment:
Q  159 gaaaattaccttaaaccagctccaaatagttaagcacaaaaat-tgaatatgaa 211  Q
    |||||||||||| |||||||||  |||||||||||||||| || ||||||||||    
T  14839141 gaaaattaccttgaaccagctctgaatagttaagcacaaacatctgaatatgaa 14839088  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 50862573 - 50862480
Alignment:
Q  103 gaaaaccagctctgaattatgcagaaaaccaccaggaacttgctctgaattattcagaaaattaccttaaaccagctccaaatagttaagcaca 196  Q
    ||||| ||||||| |||||||||||||| ||||  || || ||||  |||||| ||||||| |||||| |||||||||  ||||| ||||||||    
T  50862573 gaaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaatagataagcaca 50862480  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 25433786 - 25433734
Alignment:
Q  232 aagcatatattttgaagttatggtaacaaaggctaatacattattcaacaaaa 284  Q
    |||||||||||||| ||||||| |||| ||||||||| ||| ||| |||||||    
T  25433786 aagcatatattttggagttatgttaactaaggctaatgcataatttaacaaaa 25433734  T

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