View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_2 (Length: 597)
Name: NF8143_low_2
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 579; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Original strand, 4178696 - 4179286
Alignment:
| Q |
1 |
ggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178696 |
ggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaat |
4178795 |
T |
|
| Q |
101 |
tcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgcagcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178796 |
tcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcatcgcatgcatgaaatctataaactttatgcgatattttgcagcaac |
4178895 |
T |
|
| Q |
201 |
ttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatctgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4178896 |
ttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatctgta |
4178995 |
T |
|
| Q |
301 |
aagtttagcaggaagcatgatgcaccacatagagtcacaagtacagaagtcatggacttgctgacagagtcacagttgccaacatttgtaaaaattggtg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4178996 |
aagtttagcaggaagcatgatgcaccacatagagtcacaagtacagaagtcatggacttgcagacagagtcacagttgccaacatttgtaaaaattggtg |
4179095 |
T |
|
| Q |
401 |
acaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtatcaggctcct |
500 |
Q |
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| T |
4179096 |
acaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtaccaggctcct |
4179195 |
T |
|
| Q |
501 |
ctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatcgttcttagaatcatcatcgatttctaaattgatgtccatc |
591 |
Q |
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| T |
4179196 |
ctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatcgttcttagaatcatcatcgatttctaaattgatgtccatc |
4179286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Original strand, 4167769 - 4168339
Alignment:
| Q |
1 |
ggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4167769 |
ggaaatgtaacgaaaagcatgctgcaaaaatcgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaat |
4167868 |
T |
|
| Q |
101 |
tcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgcagcaac |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| |||||| ||||| |||||||| |
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| T |
4167869 |
tcaccacattccgatcaaacaatgcaattgctgcaaacaccagaattgacattactgcatgcataaaatctataaaccgtatgcggtatttagcagcaac |
4167968 |
T |
|
| Q |
201 |
ttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatctgta |
300 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||| | |||||| ||| |
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| T |
4167969 |
ttgaggtggaagtttggttgatccatcaataacccacaagcccttaaaggtggcaaacccataaataatattacccttgctgtctctaaagctatcagta |
4168068 |
T |
|
| Q |
301 |
aagtttagcaggaagcatgatgcaccacatagagtcacaagtacagaagtcatggacttgctgacagagtcacagttgccaacatttgtaaaaattggtg |
400 |
Q |
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||| ||||||| ||||||||||||||||| |||||||||||| ||| |||||| |||||||||||||||||||| |||||| ||||||||| ||||||| |
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| T |
4168069 |
aagcttagcagaaagcatgatgcaccacagagagtcacaagtgcagcagtcatccacttgctgacagagtcacagctgccaatatttgtaaagattggtg |
4168168 |
T |
|
| Q |
401 |
acaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgcgccgtgctttgaaatgtcgaacttatagctttctgtatcaggctcct |
500 |
Q |
| |
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| |||||||| || || || |||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||||||||| | ||||||| | | || |
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| T |
4168169 |
ataaaagttgtaatgcaaggacagtgcctgtaggtagaaggtttgctaaatgtgccgtgctctgaaatgtcaaacttatagctgtttgtatcaagtttct |
4168268 |
T |
|
| Q |
501 |
ctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatc---gttcttagaatcatcat |
568 |
Q |
| |
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|| ||||||||||||||| ||||| |||| ||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
4168269 |
ctttgcttctggaacctctgcatttagcagtagtggaaccttgtgttcatccttgttcttagaatcatcat |
4168339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 34944701 - 34944370
Alignment:
| Q |
1 |
ggaaatgcaacgaaaagcatgctgcaaaaaacgccaattgccacaggcaacgccgtgaggatttcttgtatctcttttgatggttctggaaaaaagcaat |
100 |
Q |
| |
|
||||||||||| || |||||||| || ||||| |||||| | |||||||| || || ||||||| | ||||| | ||| ||| |||||| || || | |
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| T |
34944701 |
ggaaatgcaacaaacagcatgctacagaaaacaccaattccaacaggcaatgcagtaaggatttgacgcatctcatatgaaggtgatggaaagaaacagt |
34944602 |
T |
|
| Q |
101 |
tcaccacattctgatcaaacaatgcaattgctgcaaacaccagaattgacatcattgcatgcatgaaatctataaactttatgcgatattttgcagcaac |
200 |
Q |
| |
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| |||||||| |||||||||| |||||| |||| ||| |||| ||||||||| ||||||||||||||||| || ||| ||| ||||||||||| ||| |
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| T |
34944601 |
taaccacattatgatcaaacattgcaatagctgaaaaaaccaaaattgacataattgcatgcatgaaatcaatgaaccttagttgatattttgcatcaag |
34944502 |
T |
|
| Q |
201 |
ttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtggcaaacccataacaaatattccccttgctgtctcttatgctatctgta |
300 |
Q |
| |
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|| | |||||||| | | |||||||||||| | ||| ||||| || || |||||||| |||||||| || ||||| || ||||| | | |||||| || |
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| T |
34944501 |
ttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtggcaaatccataacatatgttccctttattgtctttgaagctatcagtg |
34944402 |
T |
|
| Q |
301 |
aagtttagcaggaagcatgatgcaccacatag |
332 |
Q |
| |
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||| ||| ||||||||||| ||||||||||| |
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| T |
34944401 |
aagcatagtaggaagcatgaggcaccacatag |
34944370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 263
Target Start/End: Complemental strand, 34947880 - 34947771
Alignment:
| Q |
154 |
attgcatgcatgaaatctataaactttatgcgatattttgcagcaacttgaggtggaagtttggttgatccatcaataacccacaagcccttgaaggtgg |
253 |
Q |
| |
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||||||||||||||||| || ||| ||| ||||||||||| ||| || | |||||||| | | |||||||||||| | ||| ||||| || || |||| |
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|
| T |
34947880 |
attgcatgcatgaaatcaatcaaccttagttgatattttgcatcaagttcatgtggaagtgtagctgatccatcaatgatccataagcctttaaatgtgg |
34947781 |
T |
|
| Q |
254 |
caaacccata |
263 |
Q |
| |
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|||| ||||| |
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|
| T |
34947780 |
caaatccata |
34947771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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