View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8143_low_20 (Length: 370)

Name: NF8143_low_20
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8143_low_20
NF8143_low_20
[»] chr7 (3 HSPs)
chr7 (18-365)||(37444855-37445201)
chr7 (268-308)||(9483385-9483425)
chr7 (121-196)||(34943575-34943649)
[»] chr3 (3 HSPs)
chr3 (254-314)||(51497977-51498037)
chr3 (254-303)||(51733131-51733180)
chr3 (256-308)||(26643296-26643348)
[»] chr2 (3 HSPs)
chr2 (256-316)||(41047863-41047923)
chr2 (256-308)||(6736479-6736531)
chr2 (275-315)||(41508544-41508584)
[»] chr1 (2 HSPs)
chr1 (256-308)||(3523380-3523433)
chr1 (256-308)||(21057772-21057824)
[»] chr5 (3 HSPs)
chr5 (256-308)||(4206315-4206367)
chr5 (275-316)||(1375921-1375962)
chr5 (275-308)||(35972048-35972081)
[»] chr4 (1 HSPs)
chr4 (256-308)||(43093543-43093595)
[»] scaffold0024 (1 HSPs)
scaffold0024 (254-308)||(151418-151472)
[»] chr8 (2 HSPs)
chr8 (261-315)||(10170397-10170451)
chr8 (256-308)||(14227211-14227263)
[»] chr6 (1 HSPs)
chr6 (276-308)||(32694776-32694808)


Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 37444855 - 37445201
Alignment:
Q  18 tcaatgacatcaatgacaaagaaaagcaaagaaatttgcaataatagtaggacttgaataaacaaagagtagccaatttaccctatgcctgcactgatag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  37444855 tcaatgacatcaatgacaaagaaaagcaaagaaatttgcaataatagtaggacttgaataaacaaagtatagccaatttaccctatgcctgcactgatag 37444954  T
Q  118 agtgaaaatgagaagagggtccatgtctatatcataaatgtagtaaagaagtcattaatttctacttatgacatttgcacgcccggatttgtcgtaagtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  37444955 agtgaaaatgagaagagggtccatgtctatatcataaatgtagtaaagaagtcattaatttctacttatgacatttgcacg-ccggatttgtcgtaagtt 37445053  T
Q  218 ctaatctatgaaatgaaatatactcgagcggacacaatactgacacgtctacaccgataataatttgataaaatagaataattgaatgtaaatacatgtt 317  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||    
T  37445054 ctaatctatgaaatgaaatatactcgagcggacacaataatgacacgtctacacttataataatttgacaaaatagaataattgaatgtaaatacatgtt 37445153  T
Q  318 acaatgtcatttcagaattgtacatttaacatatatctaacaccaaac 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37445154 acaatgtcatttcagaattgtacatttaacatatatctaacaccaaac 37445201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 9483385 - 9483425
Alignment:
Q  268 acaccgataataatttgataaaatagaataattgaatgtaa 308  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  9483385 acaccaataataatttgagaaaatagaataattgaatgtaa 9483425  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 34943575 - 34943649
Alignment:
Q  121 gaaaatgagaagagggtccatgtctatatcataaatgtagtaaagaagtcattaatttctacttatgacatttgca 196  Q
    ||||| |||||| ||||||||||||||  ||||||||| || ||||| || ||||||||| ||||| |||||||||    
T  34943575 gaaaaggagaag-gggtccatgtctatgacataaatgttgtgaagaaatctttaatttcttcttataacatttgca 34943649  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 51497977 - 51498037
Alignment:
Q  254 atactgacacgtctacaccgataataatttgataaaatagaataattgaatgtaaatacat 314  Q
    ||||||||||||| ||||   |||||||||||||||||||||||||||||||||| |||||    
T  51497977 atactgacacgtccacactagtaataatttgataaaatagaataattgaatgtaactacat 51498037  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 51733131 - 51733180
Alignment:
Q  254 atactgacacgtctacaccgataataatttgataaaatagaataattgaa 303  Q
    ||||||||| ||  ||||||||||||| |||| |||||||||||||||||    
T  51733131 atactgacaggttgacaccgataataacttgagaaaatagaataattgaa 51733180  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 26643348 - 26643296
Alignment:
Q  256 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 308  Q
    ||||||||||| | || | ||||||||| | ||||||||||||||||||||||    
T  26643348 actgacacgtcgatactggtaataatttaagaaaatagaataattgaatgtaa 26643296  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 41047863 - 41047923
Alignment:
Q  256 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaaatacatgt 316  Q
    ||||||||||| |||| ||||||||||||| ||| | ||||||||||||||||| ||||||    
T  41047863 actgacacgtcgacactgataataatttgaaaaagtggaataattgaatgtaaacacatgt 41047923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 6736479 - 6736531
Alignment:
Q  256 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 308  Q
    ||||||||||| |||||| ||||||||||| || || ||||||||||||||||    
T  6736479 actgacacgtcgacaccggtaataatttgagaatatggaataattgaatgtaa 6736531  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 41508544 - 41508584
Alignment:
Q  275 taataatttgataaaatagaataattgaatgtaaatacatg 315  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  41508544 taataatttgagaaaatagaataattgaatgtaactacatg 41508584  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 3523380 - 3523433
Alignment:
Q  256 actgacacgtctacaccgataataatttgataaaatagaa-taattgaatgtaa 308  Q
    ||||||||||  |||||||||||||||||||||||||||| | |||||||||||    
T  3523380 actgacacgtagacaccgataataatttgataaaatagaagtgattgaatgtaa 3523433  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 21057772 - 21057824
Alignment:
Q  256 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 308  Q
    ||||||||||| |||||| ||||||||| | ||||||  ||||||||||||||    
T  21057772 actgacacgtcgacaccgctaataattttagaaaataacataattgaatgtaa 21057824  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 4206315 - 4206367
Alignment:
Q  256 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 308  Q
    ||||||||||| |||||| ||||||||||| |||||| |||| ||||||||||    
T  4206315 actgacacgtcaacaccgttaataatttgagaaaataaaatatttgaatgtaa 4206367  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Complemental strand, 1375962 - 1375921
Alignment:
Q  275 taataatttgataaaatagaataattgaatgtaaatacatgt 316  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||    
T  1375962 taataatttgaaaaaatagcataattgaatgtaaaaacatgt 1375921  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 35972081 - 35972048
Alignment:
Q  275 taataatttgataaaatagaataattgaatgtaa 308  Q
    ||||||||| ||||||||||||||||||||||||    
T  35972081 taataatttaataaaatagaataattgaatgtaa 35972048  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 308
Target Start/End: Complemental strand, 43093595 - 43093543
Alignment:
Q  256 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 308  Q
    ||||||||||| ||||| |||||||||||| ||||| | ||||||||||||||    
T  43093595 actgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaa 43093543  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 151472 - 151418
Alignment:
Q  254 atactgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 308  Q
    ||||| ||||| | |||||||||||||||||| |||||| ||||||| |||||||    
T  151472 atacttacacgacaacaccgataataatttgagaaaataaaataattaaatgtaa 151418  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 315
Target Start/End: Complemental strand, 10170451 - 10170397
Alignment:
Q  261 cacgtctacaccgataataatttgataaaatagaataattgaatgtaaatacatg 315  Q
    |||||| ||||| |||||||||||| |||||| | ||||||||||||| ||||||    
T  10170451 cacgtcaacaccaataataatttgagaaaataaattaattgaatgtaactacatg 10170397  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 14227211 - 14227263
Alignment:
Q  256 actgacacgtctacaccgataataatttgataaaatagaataattgaatgtaa 308  Q
    ||||||||||| ||||| |||||||||||| ||||||  |||||| |||||||    
T  14227211 actgacacgtcaacaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 32694808 - 32694776
Alignment:
Q  276 aataatttgataaaatagaataattgaatgtaa 308  Q
    |||||||||| ||||||||||||||||||||||    
T  32694808 aataatttgagaaaatagaataattgaatgtaa 32694776  T

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