View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8143_low_23 (Length: 358)

Name: NF8143_low_23
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8143_low_23
NF8143_low_23
[»] chr4 (9 HSPs)
chr4 (23-232)||(17447951-17448160)
chr4 (234-344)||(17447684-17447793)
chr4 (234-313)||(43145987-43146066)
chr4 (246-313)||(4380644-4380711)
chr4 (235-309)||(4379991-4380065)
chr4 (235-311)||(24157934-24158010)
chr4 (245-313)||(31328834-31328902)
chr4 (190-232)||(43146197-43146239)
chr4 (247-313)||(53772839-53772905)
[»] chr1 (8 HSPs)
chr1 (235-313)||(40022181-40022259)
chr1 (252-313)||(50271743-50271804)
chr1 (247-311)||(36689020-36689084)
chr1 (247-311)||(36705120-36705184)
chr1 (247-310)||(26118707-26118770)
chr1 (190-225)||(40022467-40022502)
chr1 (235-313)||(25671967-25672045)
chr1 (246-287)||(40022852-40022893)
[»] chr5 (12 HSPs)
chr5 (234-313)||(29088559-29088638)
chr5 (102-169)||(26492798-26492865)
chr5 (190-232)||(29088386-29088428)
chr5 (252-313)||(31082703-31082764)
chr5 (252-313)||(41045415-41045476)
chr5 (247-313)||(234732-234798)
chr5 (247-313)||(235432-235498)
chr5 (247-313)||(237074-237140)
chr5 (247-313)||(237775-237841)
chr5 (275-313)||(19359735-19359773)
chr5 (275-313)||(19360458-19360496)
chr5 (252-313)||(22799719-22799780)
[»] chr7 (3 HSPs)
chr7 (98-190)||(11409793-11409885)
chr7 (235-313)||(31954236-31954314)
chr7 (252-313)||(31955177-31955238)
[»] chr6 (5 HSPs)
chr6 (102-169)||(25830947-25831014)
chr6 (235-313)||(33435371-33435449)
chr6 (247-311)||(20833921-20833985)
chr6 (234-309)||(10926177-10926252)
chr6 (247-310)||(13255053-13255116)
[»] scaffold1036 (1 HSPs)
scaffold1036 (98-190)||(3011-3103)
[»] chr3 (5 HSPs)
chr3 (235-313)||(48648235-48648313)
chr3 (245-310)||(41458787-41458852)
chr3 (245-313)||(30222051-30222119)
chr3 (245-313)||(51827447-51827515)
chr3 (252-311)||(11651333-11651392)
[»] chr2 (5 HSPs)
chr2 (235-313)||(9540976-9541054)
chr2 (247-313)||(26588270-26588336)
chr2 (245-313)||(8541783-8541851)
chr2 (245-309)||(20632862-20632926)
chr2 (273-313)||(33512129-33512169)
[»] scaffold0096 (1 HSPs)
scaffold0096 (247-313)||(39927-39993)
[»] chr8 (2 HSPs)
chr8 (245-311)||(531428-531494)
chr8 (275-313)||(8373675-8373713)


Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 17448160 - 17447951
Alignment:
Q  23 agcagagactgcattttttatttcttcagaagttggagtcatagttagaaggttattcacattatcatccagaagttcaggaatagcttcatccatcaaa 122  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17448160 agcaaagactgcattttttatttcttcagaagttggagtcatagttagaaggttattcacattatcatccagaagttcaggaatagattcatccatcaaa 17448061  T
Q  123 gcatgatcctgctaaacagtgttagtgcaaaaaacatttttaaaataattaatagcatgagaagcaatttgacctaatttaaagccaaattcctgaacct 222  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17448060 gcatgatcctgctaaacagtgttagtacaaaaaacatttttaaaataattaatagcatgagaagcaatttgacctaatttaaagccaaattcttgaacct 17447961  T
Q  223 aattgactgc 232  Q
    ||||||||||    
T  17447960 aattgactgc 17447951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 17447793 - 17447684
Alignment:
Q  234 agttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaacagatatagattttaaacaa 333  Q
    ||||||||||||||||||||||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  17447793 agttcacgtggtattttaaatgaacaaatataaacccttagattaaaagagatcaacggttaatatttggtgtcaacgaaca-atatagattttagacaa 17447695  T
Q  334 ccaacagtttg 344  Q
    |||||||||||    
T  17447694 ccaacagtttg 17447684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 43146066 - 43145987
Alignment:
Q  234 agttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  43146066 agttcacgtagtattttaaatgaacaaacataagctcttagatcaaaagagatcaacggttaacatttggtgtcaacgaa 43145987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 4380644 - 4380711
Alignment:
Q  246 attttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  4380644 attttaaatgaacaaatacaagcccttagatcaaaagagatcaacggttaatatttggtgtcaacgaa 4380711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 4380065 - 4379991
Alignment:
Q  235 gttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaa 309  Q
    |||||| ||||||||||||| |||||||| |||| |||| |||||||||||||||||||||| ||||||||||||    
T  4380065 gttcacatggtattttaaataaacaaatacaagcccttagatcaaaagagatcaacggttaacatttggtgtcaa 4379991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 235 - 311
Target Start/End: Complemental strand, 24158010 - 24157934
Alignment:
Q  235 gttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacg 311  Q
    |||||| || |||| |||||||||||||||||||  ||| || |||||| |||||||||||| ||||||||||||||    
T  24158010 gttcacatgatattctaaatgaacaaatataagcctttagataaaaagaaatcaacggttaagatttggtgtcaacg 24157934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 31328902 - 31328834
Alignment:
Q  245 tattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    ||||||||||||||||||||||||  | | || |||||| ||||||| |||| ||||||||||||||||    
T  31328902 tattttaaatgaacaaatataagccttcagattaaaagaaatcaacgtttaaaatttggtgtcaacgaa 31328834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 232
Target Start/End: Complemental strand, 43146239 - 43146197
Alignment:
Q  190 tttgacctaatttaaagccaaattcctgaacctaattgactgc 232  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  43146239 tttgacctaatttaaagccaaattcctgaaccaaatcgactgc 43146197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 53772905 - 53772839
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    ||||||||||||||| | ||||  ||  ||||||||| ||||||| |||||||||||||||||||||    
T  53772905 ttttaaatgaacaaacaaaagcctttggatcaaaagaaatcaacgattaatatttggtgtcaacgaa 53772839  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 40022259 - 40022181
Alignment:
Q  235 gttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||| ||| ||||||||||||    
T  40022259 gttcacgtggtattttaaatgaacaaatacaagctcttagatcaaaagagatcaacgggtaacattaggtgtcaacgaa 40022181  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 50271743 - 50271804
Alignment:
Q  252 aatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||||  ||| ||||||||| |||||| ||||| ||||||||||||||||    
T  50271743 aatgaataaatataagcctttagatcaaaagaaatcaacagttaagatttggtgtcaacgaa 50271804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 36689020 - 36689084
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacg 311  Q
    |||||| ||||||||||||| |  ||| |||||| || ||||||||||||||||| |||||||||    
T  36689020 ttttaattgaacaaatataaacctttagatcaaacgaaatcaacggttaatattttgtgtcaacg 36689084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 36705120 - 36705184
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacg 311  Q
    |||||| ||||||||||||| |  ||| |||||| || ||||||||||||||||| |||||||||    
T  36705120 ttttaattgaacaaatataaacctttagatcaaacgaaatcaacggttaatattttgtgtcaacg 36705184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 26118770 - 26118707
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaac 310  Q
    ||||||||||||||||| ||||  ||| ||||||||| |||||||||| |||  ||||||||||    
T  26118770 ttttaaatgaacaaataaaagcctttagatcaaaagaaatcaacggttcatacctggtgtcaac 26118707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 225
Target Start/End: Original strand, 40022467 - 40022502
Alignment:
Q  190 tttgacctaatttaaagccaaattcctgaacctaat 225  Q
    ||||||||||||||||||||||||||| ||||||||    
T  40022467 tttgacctaatttaaagccaaattccttaacctaat 40022502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 25671967 - 25672045
Alignment:
Q  235 gttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| || ||||||||||||| ||||||||||  | | || |||||| ||||||| |||| |||| |||||||||||    
T  25671967 gttcacatgatattttaaatgaataaatataagccttcagatgaaaagaaatcaacgcttaagatttagtgtcaacgaa 25672045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 40022852 - 40022893
Alignment:
Q  246 attttaaatgaacaaatataagctcttaaatcaaaagagatc 287  Q
    ||||||||||||||||||||| | |||| |||||||||||||    
T  40022852 attttaaatgaacaaatataaccccttagatcaaaagagatc 40022893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 29088559 - 29088638
Alignment:
Q  234 agttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||  |||||||||||    
T  29088559 agttcacttggtattttaaatgaacaaacataagctcttagatcaaaagagatcaacggttaacattaagtgtcaacgaa 29088638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 26492865 - 26492798
Alignment:
Q  102 ggaatagcttcatccatcaaagcatgatcctgctaaacagtgttagtgcaaaaaacatttttaaaata 169  Q
    |||||||| || |||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  26492865 ggaatagcctcttccaccaaagcatgatcctgcaaaacattgttagtgcaaaaaacattcttaaaata 26492798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 232
Target Start/End: Original strand, 29088386 - 29088428
Alignment:
Q  190 tttgacctaatttaaagccaaattcctgaacctaattgactgc 232  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  29088386 tttgacctaatttaaagccaaattcctgaacctaatcgactgc 29088428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 31082703 - 31082764
Alignment:
Q  252 aatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| |||||||||| |||| ||||||||| |||||  ||||| ||||||||||||||||    
T  31082703 aatgaataaatataagcccttagatcaaaagaaatcaatagttaagatttggtgtcaacgaa 31082764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 313
Target Start/End: Complemental strand, 41045476 - 41045415
Alignment:
Q  252 aatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||||  ||| ||||||||| |||||| ||||| ||||||||||||||||    
T  41045476 aatgaataaatataagcctttagatcaaaagaaatcaacagttaagatttggtgtcaacgaa 41045415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 234798 - 234732
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||| ||| |  ||| || ||| || |||||||||||||||||||||||||||||    
T  234798 ttttaattgaacaaatgtaaaccattagataaaacgaaatcaacggttaatatttggtgtcaacgaa 234732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 235432 - 235498
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||| ||| |  ||| |||||| || |||||||||||||||||| ||||||||||    
T  235432 ttttaattgaacaaatgtaaaccattagatcaaacgaaatcaacggttaatatttgatgtcaacgaa 235498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 237140 - 237074
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||| ||| |  ||| |||||| || |||||||||||||||||| ||||||||||    
T  237140 ttttaattgaacaaatgtaaaccattagatcaaacgaaatcaacggttaatatttgatgtcaacgaa 237074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 237775 - 237841
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||| ||| |  ||| || ||| || |||||||||||||||||||||||||||||    
T  237775 ttttaattgaacaaatgtaaaccattagatgaaacgaaatcaacggttaatatttggtgtcaacgaa 237841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 19359773 - 19359735
Alignment:
Q  275 atcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| || |||||||||||||||||||||||||||||    
T  19359773 atcaaacgaaatcaacggttaatatttggtgtcaacgaa 19359735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 19360458 - 19360496
Alignment:
Q  275 atcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| || |||||||||||||||||||||||||||||    
T  19360458 atcaaacgaaatcaacggttaatatttggtgtcaacgaa 19360496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 22799719 - 22799780
Alignment:
Q  252 aatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| |||||||||   ||| ||||||||| |||||| ||||| ||||||||||||||||    
T  22799719 aatgaataaatataagtctttagatcaaaagaaatcaacagttaagatttggtgtcaacgaa 22799780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 11409793 - 11409885
Alignment:
Q  98 ttcaggaatagcttcatccatcaaagcatgatcctgctaaacagtgttagtgcaaaaaacatttttaaaataattaatagcatgagaagcaat 190  Q
    ||||||||| || || |||| |||||||||||||||| ||| || |||||| ||||||||||||| ||||||||||| ||||||||| |||||    
T  11409793 ttcaggaattgcatcttccaccaaagcatgatcctgcaaaaaagagttagtacaaaaaacattttgaaaataattaacagcatgagaggcaat 11409885  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 31954236 - 31954314
Alignment:
Q  235 gttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| || |||| ||||| ||||||| |||||  |||||| |||||| |||||||||||| ||||||||||||||||    
T  31954236 gttcacatgatattctaaatcaacaaatgtaagcctttaaataaaaagaaatcaacggttaagatttggtgtcaacgaa 31954314  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 313
Target Start/End: Original strand, 31955177 - 31955238
Alignment:
Q  252 aatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||||| ||| ||||||||| |||||| ||||| ||||  ||||||||||    
T  31955177 aatgaataaatataagcttttagatcaaaagaaatcaacagttaagatttaatgtcaacgaa 31955238  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 25830947 - 25831014
Alignment:
Q  102 ggaatagcttcatccatcaaagcatgatcctgctaaacagtgttagtgcaaaaaacatttttaaaata 169  Q
    ||||||||||| |||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||    
T  25830947 ggaatagcttcttccaccaaagcatgatcctgcaaaacattgttagtgcaaaaaacattcttaaaata 25831014  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 33435449 - 33435371
Alignment:
Q  235 gttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| || |||| |||||||| ||||||||||  ||| || |||||| |||||| ||||| ||||||||||||||||    
T  33435449 gttcacatgatattctaaatgaataaatataagcctttagataaaaagaaatcaacagttaagatttggtgtcaacgaa 33435371  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Original strand, 20833921 - 20833985
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacg 311  Q
    |||||| ||||||||||||| |  ||| |||||| || ||||||||| |||||||||||||||||    
T  20833921 ttttaattgaacaaatataaacctttagatcaaacgaaatcaacggtcaatatttggtgtcaacg 20833985  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 10926252 - 10926177
Alignment:
Q  234 agttcacgtggtattttaaatgaacaaatataagctctt-aaatcaaaagagatcaacggttaatatttggtgtcaa 309  Q
    ||||||| || |||| |||||||||||||||||| |||| | ||||||| | |||||||||||  ||||||||||||    
T  10926252 agttcacatgatattctaaatgaacaaatataag-tcttcagatcaaaaaaaatcaacggttataatttggtgtcaa 10926177  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 13255116 - 13255053
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaa-atcaaaagagatcaacggttaatatttggtgtcaac 310  Q
    |||||||||| |||||||||| |||| | ||||||||| |||||||||||| |||| ||||||||    
T  13255116 ttttaaatgagcaaatataag-tcttcagatcaaaagaaatcaacggttaaaatttagtgtcaac 13255053  T

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Target: scaffold1036 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1036
Description:

Target: scaffold1036; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 3011 - 3103
Alignment:
Q  98 ttcaggaatagcttcatccatcaaagcatgatcctgctaaacagtgttagtgcaaaaaacatttttaaaataattaatagcatgagaagcaat 190  Q
    ||||||||| || || |||| |||||||| ||||||| ||| || |||||| ||||||||||||| ||||||||||| ||||||||| |||||    
T  3011 ttcaggaattgcatcttccaccaaagcattatcctgcaaaaaagagttagtacaaaaaacattttgaaaataattaacagcatgagaggcaat 3103  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 313
Target Start/End: Complemental strand, 48648313 - 48648235
Alignment:
Q  235 gttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| || |||| |||||||||||||||||||  ||| || |||||| |||||||||||| ||||||||||||||||    
T  48648313 gttcacatgatattctaaatgaacaaatataagcctttagataaaaagaaatcaacggttaagatttggtgtcaacgaa 48648235  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 41458787 - 41458852
Alignment:
Q  245 tattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaac 310  Q
    ||||||||||||| ||||||||||  ||  ||||||||| ||||||| |||| |||||||||||||    
T  41458787 tattttaaatgaataaatataagcctttggatcaaaagaaatcaacgattaagatttggtgtcaac 41458852  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 30222051 - 30222119
Alignment:
Q  245 tattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    ||||||||||||||||||||||||  | | || |||||| ||||||| |||| ||||||| ||||||||    
T  30222051 tattttaaatgaacaaatataagccttcagattaaaagaaatcaacgcttaaaatttggtatcaacgaa 30222119  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 51827447 - 51827515
Alignment:
Q  245 tattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||| ||||||||||||||||||   ||| || |||||| |||||||||||| |||||||| |||||||    
T  51827447 tattctaaatgaacaaatataagtctttagataaaaagaaatcaacggttaagatttggtgacaacgaa 51827515  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 11651392 - 11651333
Alignment:
Q  252 aatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacg 311  Q
    |||||| ||||||||||  ||| ||||||||| |||||| ||||| ||||||||||||||    
T  11651392 aatgaataaatataagcctttagatcaaaagaaatcaacagttaagatttggtgtcaacg 11651333  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 9540976 - 9541054
Alignment:
Q  235 gttcacgtggtattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| || |||| |||||||||||||||||||  |   ||||||||| |||||||| ||| ||||||||||||||||    
T  9540976 gttcacatgatattctaaatgaacaaatataagccatcggatcaaaagatatcaacggctaagatttggtgtcaacgaa 9541054  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 26588336 - 26588270
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||| ||| |  ||| |||||| || |||||||||||||||||||||||||||||    
T  26588336 ttttaattgaacaaatgtaaaccattagatcaaacgaaatcaacggttaatatttggtgtcaacgaa 26588270  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 8541851 - 8541783
Alignment:
Q  245 tattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    ||||||||||||| ||||||||| | ||  ||||||||| ||||||| |||| |||| |||||||||||    
T  8541851 tattttaaatgaataaatataagtttttggatcaaaagaaatcaacgattaagattttgtgtcaacgaa 8541783  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 20632862 - 20632926
Alignment:
Q  245 tattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaa 309  Q
    |||||||| ||||||||||||| |  ||| |||||| || ||||||||| |||||||| ||||||    
T  20632862 tattttaattgaacaaatataaacctttagatcaaacgaaatcaacggtcaatatttgatgtcaa 20632926  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 33512169 - 33512129
Alignment:
Q  273 aaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    ||||||||||| ||||||| ||||||||| |||||||||||    
T  33512169 aaatcaaaagaaatcaacgattaatatttagtgtcaacgaa 33512129  T

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Target: scaffold0096 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 39993 - 39927
Alignment:
Q  247 ttttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| ||||||||| ||| |  ||| |||||| || ||||||| |||||||||||||||||||||    
T  39993 ttttaattgaacaaatgtaaaccattagatcaaacgaaatcaacgattaatatttggtgtcaacgaa 39927  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 531428 - 531494
Alignment:
Q  245 tattttaaatgaacaaatataagctcttaaatcaaaagagatcaacggttaatatttggtgtcaacg 311  Q
    ||||||||||||| ||||||||||  ||  ||||||||| ||| ||| |||| ||||||||||||||    
T  531428 tattttaaatgaataaatataagcctttggatcaaaagaaatccacgattaagatttggtgtcaacg 531494  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 8373675 - 8373713
Alignment:
Q  275 atcaaaagagatcaacggttaatatttggtgtcaacgaa 313  Q
    |||||| || |||||||||||||||||||||||||||||    
T  8373675 atcaaacgaaatcaacggttaatatttggtgtcaacgaa 8373713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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