View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8143_low_24 (Length: 354)
Name: NF8143_low_24
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 32313361 - 32313028
Alignment:
| Q |
4 |
agaaactcacttatctaaagtgtgccatcaaggagacattgcgtctccaccctcccatccctcttctcctccatgaaaccgcaaaggatgcaacagttgg |
103 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
32313361 |
agaaactcacttatctaaagtgtgccgtcaaggagacgttgcgtctccaccctcccatcccccttctcctccacgaaaccgcggaggatgcaacagttgg |
32313262 |
T |
|
| Q |
104 |
tggttattttgttcctaagggctcgcgcgtgatgataaatgtgtgggctataggaagagacaaagactcgtggaaagatccggaagagtttaggccttcg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
32313261 |
tggttattttgttcctaagggctcgcgcgtgatgataaatgtgtgggctataggaagagacaaagactcgtgggaagatccagaagagtttaggccttcg |
32313162 |
T |
|
| Q |
204 |
cggtttttggactcaagtgcaccagattttaaaggaagtcattttgagtttattccatttgggtctggtcgaaggtcttgtcctggaatgcaattgggcc |
303 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32313161 |
cggtttttggattcaagtgcaccagattttaaaggaagtcattttgagtttattccattcgggtctggtcgaaggtcttgtcctggaatgcaattgggcc |
32313062 |
T |
|
| Q |
304 |
tttatgcgttggatttagctttggcgcatttact |
337 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
32313061 |
tttatgcgttggatttagctttggcacatttact |
32313028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 18094006 - 18094051
Alignment:
| Q |
232 |
ttaaaggaagtcattttgagtttattccatttgggtctggtcgaag |
277 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
18094006 |
ttaaaggacatcattttgagcttattccatttgggtctggtagaag |
18094051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 4 - 337
Target Start/End: Complemental strand, 5046237 - 5045907
Alignment:
| Q |
4 |
agaaactcacttatctaaagtgtgccatcaaggagacattgcgtctccaccctcccatccctcttctcctccatgaaaccgcaaaggatgcaacagttgg |
103 |
Q |
| |
|
|||||||||||||| |||| || | | | ||||| || ||||||||||||||||||| ||| ||||||| | ||||| | |||| || | |||||| |
|
|
| T |
5046237 |
agaaactcacttatataaaatgcgtcgttaaggaaacgttgcgtctccaccctcccaccccccttctccac---gaaactgtggaggacgcgatagttgg |
5046141 |
T |
|
| Q |
104 |
tggttattttgttcctaagggctcgcgcgtgatgataaatgtgtgggctataggaagagacaaagactcgtggaaagatccggaagagtttaggccttcg |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| |||||| |
|
|
| T |
5046140 |
tggttattttgttcctaagggctcgcgtgtgatgatatacatgtgggttataggaagagacaaagactcatgggaagattcggaagagtttagaccttcg |
5046041 |
T |
|
| Q |
204 |
cggtttttggactcaagtgcaccagattttaaaggaagtcattttgagtttattccatttgggtctggtcgaaggtcttgtcctgga-atgcaattgggc |
302 |
Q |
| |
|
|||||||| | ||||||| |||||| ||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||| || |||||||||| | |
|
|
| T |
5046040 |
cggtttttaaattcaagtgtaccagactttaaagaaagtcattttgagtttattccattcgggtaaggtcgaaggtcttg-cctcgacatgcaattggcc |
5045942 |
T |
|
| Q |
303 |
ctttatgcgttggatttagctttggcgcatttact |
337 |
Q |
| |
|
|||||| | || || |||||||||| |||||||| |
|
|
| T |
5045941 |
ctttatacttttgacttagctttggtccatttact |
5045907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 301
Target Start/End: Original strand, 8262012 - 8262085
Alignment:
| Q |
228 |
gattttaaaggaagtcattttgagtttattccatttgggtctggtcgaaggtcttgtcctggaatgcaattggg |
301 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| || || || || ||||| || ||||| ||||| |
|
|
| T |
8262012 |
gatttcaaaggaagtaattttgagtttattccatttgggtcaggacgtagatcctgtcccggtatgcagttggg |
8262085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University