View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_25 (Length: 349)
Name: NF8143_low_25
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 5e-47; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 170 - 272
Target Start/End: Complemental strand, 28421499 - 28421396
Alignment:
| Q |
170 |
aaattaaagtacatagttttctttgaggcaaa-gtacataacttatgcgatgagacaaataaaggtatacttaactaattattcaaaaacatgtgacaca |
268 |
Q |
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| T |
28421499 |
aaattaaagtacatagttttctttgaggcaaaagtacataacttatgcgatgagacaaataaaggtatacttaactaattattcaaaaacatgtgacaca |
28421400 |
T |
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| Q |
269 |
taaa |
272 |
Q |
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|||| |
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| T |
28421399 |
taaa |
28421396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 28421625 - 28421527
Alignment:
| Q |
32 |
gcttgggtacttgttcctcttcctttgtttttcttcctttatgtcccttctttctacattttcctgcaggcatttcaaatcagtttgctaagttcacaa |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28421625 |
gcttgggtacttgttcctcttcctttgtttttcttcctttatgtcccttctttctacattttcctgcaggcatttcaaatcaatttgctaagttcacaa |
28421527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 333
Target Start/End: Complemental strand, 28421373 - 28421327
Alignment:
| Q |
287 |
ttttctcaacttaaaacctagaatgacaagtgtcgaaaggtttaaaa |
333 |
Q |
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|||| |||| |||||||||||||||||||||||| |||||||||||| |
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| T |
28421373 |
ttttttcaatttaaaacctagaatgacaagtgtcaaaaggtttaaaa |
28421327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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