View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_3 (Length: 595)
Name: NF8143_low_3
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 9 - 595
Target Start/End: Original strand, 42205186 - 42205764
Alignment:
| Q |
9 |
agtagcagagaggtaatgttagtttattcattcacagataatgaatggtggtgtagtgcnnnnnnnn-ttgcaagccagcaacctaagctagctaaaatc |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
42205186 |
agtatcagagaggtaatgttagtttattcattcacagataataaatggtg---tagtgcaaaaaaaaattgcaagccagcaacctaagctagctaaaatc |
42205282 |
T |
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| Q |
108 |
taaatctctctacggactttagcattgtg-------caattatgttgatggtaaattgtannnnnnnnnnnnnnnnnnnnnnnaaatgtgtgtaagttgt |
200 |
Q |
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| T |
42205283 |
taaatctctctacagaatttagcattgtgtgttgtgcaattatgttgatggtaaattgtattttttatttttgtgtattttttaaatgtgtgtaagttgt |
42205382 |
T |
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| Q |
201 |
agaagtagaagatttaaagtaaatgacagatagagataaatacaaacggtgccataaacgattatatattttgatattcaagtaacgaagatgcatgcat |
300 |
Q |
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| T |
42205383 |
agaagtagaagatttaaagtaaatgacagatagagataaatacaaacggtgtcataaacgattttatattttgatattcaagtaacgaagatgcatgcat |
42205482 |
T |
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| Q |
301 |
tttcggcgtcacaatcaacatgctagtggtaaagtgcacatctatactacggcaaaa------ataaattatttccatttgctatgtggcagttccctcn |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
42205483 |
tttcggcgtcacaatcaacatgctagtggtaaagtgcacatctatactacggcaaaaataaatataaattatttccatttgctatgtagcagttccctc- |
42205581 |
T |
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| Q |
395 |
nnnnnnnnnnnnnnnnatgactttatcatccggttgaaaaccaaggaactccagtcgcttgtaaggtaaatttacaggccatttggtccattctcttgta |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42205582 |
-----ctgctactgctatgactttatcatccggttgaaaaccaaggaactccagtcgcttgtaaggtaaatttacaggccatttgatccattctcttgta |
42205676 |
T |
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| Q |
495 |
atttctttttctaataactttttgtataaatgcatttcaccttctcaatttataaccataatttatgaaattaagcaatattattctccaattcatcact |
594 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42205677 |
atttctttttctaataactttttgtagaaatgcatttcaccttctc-------------aatttatgaaattaagcaatattattctccaattcatcact |
42205763 |
T |
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