View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_30 (Length: 304)
Name: NF8143_low_30
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 283
Target Start/End: Original strand, 6315252 - 6315516
Alignment:
| Q |
19 |
gtttaaatggagaaatggtaatgcatgaaagttaagggaggggcgttacaaattatatagatgacccatctggctctcattgtcaccttggcatacacat |
118 |
Q |
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| T |
6315252 |
gtttaaatggagaaatggtaatgcatgaaagttaagggaggggcgttacaaattatatagatgacccatctggctctcattgtcaccttggcatacacat |
6315351 |
T |
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| Q |
119 |
ttatagtatcgagctaagatnnnnnnnnnnnnnnnaggatatttatgtggaaatgaatttttcttccttgtgaagaaaaatatatttttctttacattca |
218 |
Q |
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| T |
6315352 |
ttatagtatcgagctaagataaagagagagagagaaggatatttatgtggaaatgaatttttcttccttgtgaagaaaaatatatttttctttacattca |
6315451 |
T |
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| Q |
219 |
cattggttgaattggttttgtaccactttttgaaaaatcgatatttatattagtattttacttta |
283 |
Q |
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| T |
6315452 |
cattggttgaattggttttgtaccactttttgaaaaatcgatatttatattagtattttacttta |
6315516 |
T |
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