View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_34 (Length: 296)
Name: NF8143_low_34
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 100 - 279
Target Start/End: Original strand, 32742305 - 32742481
Alignment:
| Q |
100 |
catatagtttggtttacaaggcaataaaacttaaatttgatacatcaatttttacaataagatttaaaatgatataattagaatcgatttttctagttta |
199 |
Q |
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| T |
32742305 |
catatagtttggtttacaaggcaataaaacttaaatttgatacatcaacttttacaataagatttaaaatgatataattagaatcgatttttctagttta |
32742404 |
T |
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| Q |
200 |
ttttttgtacaatatttattaaaggaaagggaaacaaaattaaagcaaaagattaacatttggccctatgactaatagct |
279 |
Q |
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| T |
32742405 |
ttttttgtacaatatttattaaaggaaagggaaacaaa---aaagcaaaagattaacatttggccctatgactaatagct |
32742481 |
T |
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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 32741924 - 32742002
Alignment:
| Q |
1 |
tagtaaacacaacgactctgcaaaaatggcgacaaagttaattgattcatgaaagagaatgtatcatgtatggcgacaa |
79 |
Q |
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| T |
32741924 |
tagtaaacacaacgactctgcaaaaatggcgacaaagttaattgattcatgaaagagaatgtatcatgtatggcaacaa |
32742002 |
T |
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