View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8143_low_38 (Length: 284)

Name: NF8143_low_38
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8143_low_38
NF8143_low_38
[»] chr2 (36 HSPs)
chr2 (1-266)||(6315585-6315850)
chr2 (118-257)||(28898034-28898173)
chr2 (118-262)||(15508958-15509102)
chr2 (118-251)||(1110242-1110375)
chr2 (118-260)||(42182933-42183075)
chr2 (121-256)||(4964671-4964806)
chr2 (118-263)||(37228542-37228688)
chr2 (98-218)||(31395481-31395599)
chr2 (142-263)||(37719828-37719949)
chr2 (110-262)||(26767754-26767905)
chr2 (201-260)||(15508911-15508970)
chr2 (119-262)||(37398806-37398949)
chr2 (203-260)||(31395571-31395628)
chr2 (118-182)||(24895339-24895403)
chr2 (171-262)||(27968913-27969004)
chr2 (171-262)||(28091583-28091674)
chr2 (171-262)||(28101815-28101906)
chr2 (203-262)||(32856128-32856187)
chr2 (201-263)||(1110192-1110254)
chr2 (118-180)||(18511283-18511345)
chr2 (118-159)||(1107082-1107123)
chr2 (118-183)||(9470125-9470190)
chr2 (201-262)||(37398938-37398999)
chr2 (227-263)||(6315664-6315700)
chr2 (226-262)||(20951601-20951637)
chr2 (226-256)||(1107039-1107069)
chr2 (112-249)||(24389885-24390023)
chr2 (230-260)||(29806200-29806230)
chr2 (202-256)||(35316400-35316454)
chr2 (95-182)||(38104267-38104356)
chr2 (203-257)||(42182889-42182943)
chr2 (118-182)||(3804628-3804693)
chr2 (203-260)||(28898163-28898220)
chr2 (203-256)||(37228499-37228552)
chr2 (203-251)||(12989319-12989367)
chr2 (131-187)||(33746987-33747043)
[»] chr1 (41 HSPs)
chr1 (121-260)||(14093995-14094134)
chr1 (118-262)||(11430485-11430628)
chr1 (87-260)||(13388331-13388506)
chr1 (121-260)||(11135786-11135925)
chr1 (118-218)||(41918039-41918139)
chr1 (122-261)||(41095602-41095741)
chr1 (118-261)||(50773104-50773247)
chr1 (118-262)||(32848575-32848719)
chr1 (86-179)||(50308822-50308915)
chr1 (121-260)||(28109915-28110053)
chr1 (87-262)||(30678904-30679078)
chr1 (130-199)||(44739174-44739243)
chr1 (156-248)||(5291625-5291717)
chr1 (118-190)||(5848089-5848161)
chr1 (155-263)||(43832350-43832458)
chr1 (118-172)||(9165346-9165400)
chr1 (85-166)||(50539135-50539216)
chr1 (118-184)||(4578646-4578713)
chr1 (97-183)||(22540393-22540477)
chr1 (109-183)||(41958118-41958192)
chr1 (122-172)||(43851117-43851167)
chr1 (192-262)||(44739113-44739183)
chr1 (118-183)||(2225268-2225333)
chr1 (203-260)||(11430438-11430495)
chr1 (131-212)||(24436509-24436590)
chr1 (118-182)||(15660937-15661001)
chr1 (131-179)||(24911520-24911568)
chr1 (96-183)||(44271942-44272027)
chr1 (97-183)||(15523235-15523319)
chr1 (97-183)||(15531229-15531313)
chr1 (97-183)||(19101672-19101756)
chr1 (226-260)||(11135736-11135770)
chr1 (133-183)||(33114030-33114080)
chr1 (93-143)||(41918109-41918159)
chr1 (118-183)||(28218119-28218184)
chr1 (122-183)||(33193098-33193159)
chr1 (224-253)||(44760807-44760836)
chr1 (227-263)||(13388477-13388513)
chr1 (118-162)||(26980354-26980398)
chr1 (203-259)||(39039481-39039537)
chr1 (86-198)||(45426811-45426923)
[»] chr7 (31 HSPs)
chr7 (118-262)||(25428471-25428615)
chr7 (110-261)||(13919816-13919967)
chr7 (87-265)||(19840874-19841052)
chr7 (121-251)||(45909503-45909633)
chr7 (118-258)||(26703436-26703576)
chr7 (133-248)||(26189962-26190077)
chr7 (118-260)||(14759687-14759829)
chr7 (119-210)||(17354571-17354662)
chr7 (118-183)||(19494410-19494475)
chr7 (129-186)||(22786206-22786263)
chr7 (203-257)||(25428605-25428659)
chr7 (203-264)||(6442293-6442354)
chr7 (203-261)||(17354653-17354711)
chr7 (118-264)||(17749738-17749884)
chr7 (203-261)||(27888410-27888468)
chr7 (118-183)||(22189983-22190048)
chr7 (118-183)||(31502535-31502600)
chr7 (138-210)||(31959860-31959933)
chr7 (118-183)||(33008148-33008213)
chr7 (131-184)||(46067995-46068048)
chr7 (118-182)||(11824115-11824179)
chr7 (118-166)||(32205120-32205168)
chr7 (118-181)||(7775044-7775107)
chr7 (214-256)||(25686834-25686876)
chr7 (228-262)||(37549619-37549653)
chr7 (147-212)||(21963172-21963237)
chr7 (226-259)||(22786149-22786182)
chr7 (118-251)||(24539126-24539259)
chr7 (118-182)||(11692223-11692287)
chr7 (226-262)||(27888277-27888313)
chr7 (204-256)||(27949402-27949454)
[»] chr6 (21 HSPs)
chr6 (118-260)||(19090209-19090351)
chr6 (130-262)||(10060915-10061047)
chr6 (118-258)||(19737431-19737571)
chr6 (79-218)||(6992307-6992446)
chr6 (118-257)||(35128724-35128859)
chr6 (118-198)||(6531354-6531434)
chr6 (118-256)||(4595786-4595922)
chr6 (121-199)||(373446-373524)
chr6 (204-262)||(10060854-10060912)
chr6 (218-264)||(16436207-16436253)
chr6 (121-183)||(32112788-32112850)
chr6 (118-256)||(32598947-32599084)
chr6 (118-183)||(34905380-34905445)
chr6 (97-183)||(21987317-21987401)
chr6 (127-177)||(22261518-22261568)
chr6 (86-143)||(6992280-6992337)
chr6 (226-263)||(19090364-19090401)
chr6 (227-263)||(6992409-6992445)
chr6 (130-198)||(10591501-10591569)
chr6 (85-176)||(12327283-12327372)
chr6 (131-183)||(16436122-16436173)
[»] chr5 (28 HSPs)
chr5 (118-263)||(42224582-42224727)
chr5 (118-260)||(40971447-40971589)
chr5 (118-260)||(4959322-4959464)
chr5 (103-262)||(24915084-24915241)
chr5 (127-260)||(26072156-26072289)
chr5 (103-262)||(24990915-24991072)
chr5 (118-260)||(17568696-17568838)
chr5 (118-259)||(13456162-13456301)
chr5 (203-262)||(4959273-4959332)
chr5 (133-256)||(34818245-34818368)
chr5 (118-183)||(5413808-5413873)
chr5 (118-260)||(8912554-8912698)
chr5 (119-262)||(32050352-32050495)
chr5 (226-264)||(34368511-34368549)
chr5 (118-183)||(10142047-10142112)
chr5 (207-248)||(26072112-26072153)
chr5 (110-183)||(28155771-28155844)
chr5 (204-260)||(42224718-42224774)
chr5 (226-261)||(2443682-2443717)
chr5 (97-183)||(27592523-27592607)
chr5 (112-251)||(32401155-32401294)
chr5 (119-162)||(34384783-34384826)
chr5 (201-260)||(40971577-40971636)
chr5 (133-183)||(17537173-17537223)
chr5 (226-259)||(6263881-6263914)
chr5 (202-262)||(28611771-28611831)
chr5 (205-245)||(34384701-34384741)
chr5 (215-263)||(41105562-41105610)
[»] chr3 (33 HSPs)
chr3 (119-251)||(24748913-24749045)
chr3 (118-260)||(37600124-37600266)
chr3 (122-260)||(54140887-54141025)
chr3 (118-260)||(27243089-27243231)
chr3 (119-262)||(38928001-38928144)
chr3 (118-260)||(10769719-10769861)
chr3 (118-179)||(13809125-13809186)
chr3 (118-190)||(46237110-46237182)
chr3 (131-185)||(43657065-43657119)
chr3 (110-183)||(26310517-26310590)
chr3 (156-260)||(29775136-29775238)
chr3 (87-183)||(18427221-18427317)
chr3 (97-251)||(14236044-14236195)
chr3 (118-183)||(357804-357869)
chr3 (97-183)||(20791321-20791405)
chr3 (121-172)||(21232604-21232655)
chr3 (118-261)||(24734749-24734891)
chr3 (135-241)||(38414708-38414813)
chr3 (112-182)||(50661594-50661664)
chr3 (118-262)||(41451888-41452031)
chr3 (131-182)||(7013567-7013618)
chr3 (92-183)||(29588804-29588895)
chr3 (226-260)||(10769874-10769908)
chr3 (79-187)||(3313968-3314074)
chr3 (131-252)||(8824982-8825102)
chr3 (203-260)||(27243042-27243099)
chr3 (118-183)||(36750980-36751045)
chr3 (226-263)||(37600279-37600316)
chr3 (118-183)||(37776774-37776839)
chr3 (118-183)||(55452086-55452151)
chr3 (133-181)||(42926205-42926253)
chr3 (226-254)||(46237195-46237223)
chr3 (118-182)||(46575992-46576056)
[»] chr4 (33 HSPs)
chr4 (92-251)||(51206061-51206220)
chr4 (112-262)||(39016701-39016851)
chr4 (121-261)||(44832510-44832650)
chr4 (129-260)||(13069995-13070126)
chr4 (127-262)||(37315613-37315748)
chr4 (117-264)||(2187804-2187950)
chr4 (130-190)||(16178639-16178699)
chr4 (118-251)||(19447175-19447308)
chr4 (121-261)||(42862414-42862554)
chr4 (118-184)||(25719183-25719249)
chr4 (130-183)||(2088736-2088789)
chr4 (118-199)||(40812081-40812162)
chr4 (118-190)||(47237805-47237877)
chr4 (118-266)||(43771170-43771317)
chr4 (121-183)||(24834625-24834687)
chr4 (133-183)||(30867003-30867053)
chr4 (118-182)||(21776917-21776981)
chr4 (202-262)||(38537506-38537566)
chr4 (118-190)||(41278682-41278754)
chr4 (122-160)||(31250977-31251015)
chr4 (204-262)||(45081869-45081927)
chr4 (122-183)||(4138913-4138974)
chr4 (118-151)||(8109000-8109033)
chr4 (118-183)||(20225412-20225477)
chr4 (118-183)||(26361379-26361444)
chr4 (207-256)||(37315564-37315613)
chr4 (134-163)||(43958211-43958240)
chr4 (110-183)||(50571900-50571973)
chr4 (194-262)||(7283154-7283222)
chr4 (217-257)||(19933474-19933514)
chr4 (204-248)||(22542510-22542554)
chr4 (122-182)||(43124586-43124646)
chr4 (121-161)||(52671877-52671917)
[»] chr8 (25 HSPs)
chr8 (118-251)||(7599425-7599558)
chr8 (129-218)||(33417737-33417826)
chr8 (98-249)||(1205853-1206002)
chr8 (122-256)||(28211885-28212018)
chr8 (118-179)||(6387605-6387666)
chr8 (133-260)||(13407318-13407445)
chr8 (121-245)||(35689527-35689651)
chr8 (85-183)||(17499304-17499400)
chr8 (121-183)||(17716898-17716960)
chr8 (102-183)||(23685159-23685240)
chr8 (133-190)||(43026350-43026407)
chr8 (130-182)||(11310438-11310490)
chr8 (102-157)||(35151826-35151881)
chr8 (204-251)||(1205833-1205880)
chr8 (226-261)||(23142811-23142846)
chr8 (203-261)||(16983522-16983580)
chr8 (122-183)||(17741598-17741659)
chr8 (118-183)||(32072141-32072206)
chr8 (118-179)||(34861262-34861323)
chr8 (131-183)||(1977244-1977296)
chr8 (203-251)||(5980007-5980055)
chr8 (131-183)||(8903909-8903961)
chr8 (203-259)||(24184365-24184421)
chr8 (202-258)||(31691636-31691692)
chr8 (134-166)||(36804927-36804959)
[»] scaffold0054 (1 HSPs)
scaffold0054 (85-262)||(30905-31082)
[»] scaffold0099 (1 HSPs)
scaffold0099 (119-181)||(27358-27420)
[»] scaffold0018 (1 HSPs)
scaffold0018 (120-251)||(27858-27988)
[»] scaffold0155 (1 HSPs)
scaffold0155 (131-184)||(35651-35704)
[»] scaffold0543 (1 HSPs)
scaffold0543 (121-183)||(9711-9773)
[»] scaffold0492 (1 HSPs)
scaffold0492 (121-183)||(11257-11319)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 6315585 - 6315850
Alignment:
Q  1 aagcttcaattaggacaaatagattaggttagaaaaaccgaataggaattccaattctatctaaaataattcattaatataagggaaatgttagcaacac 100  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  6315585 aagcttcaattaggacaaatagatcaggttagaaaaaccgaattggaattccaattctatctaaaataattcattaatataagaggaatgttagcaacac 6315684  T
Q  101 tctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaattttt 200  Q
    |||||||| || |||  || ||||||||| |||||||||||||||| |||||| ||||| | |||| |||||||||||||||||| |||| |||||||||    
T  6315685 tctcttttgagtactcacttttttactggatgaaatcaatgtatgttccaccactttatataggttccatttccaaagtgtaggtcctacattaattttt 6315784  T
Q  201 ctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctcttaata 266  Q
      |||||||||| ||| ||||||||||||||||||||||||||||||| || ||||||||||||||    
T  6315785 tccaataaaagagtgaatattaaaaagagtgctcaaaagagagtgttgttagcattcctcttaata 6315850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 28898173 - 28898034
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||| || ||||    |||||||||| ||||    
T  28898173 ctcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggtttcatttccaaagtgtagatcctacattgatttcatccaataaaagagtgag 28898074  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattc 257  Q
    |  |||| ||||| |||||||||||||||||||| |||||    
T  28898073 tgctaaagagagtactcaaaagagagtgttgctagcattc 28898034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 15508958 - 15509102
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| || |||||||||||||||||||||||||||| |||||||| |||||||||||||||| | |||| || ||||  | |||| ||||| | ||    
T  15508958 ctcttttattgagtgaaatcaatgtatgtcccaccattttttgtgggttccatttccaaagtgtagatcctacattgatttcacccaattaaagagtaag 15509057  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |  || | |||||||| ||||||||||||||||||||||||||||    
T  15509058 tgatatagagagtgctaaaaagagagtgttgctaacattcctctt 15509102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 1110242 - 1110375
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| || |||||||||||||||||||||||| |||||||||||| |||||||||||| || || |||| || ||||  | |||||||||| |||     
T  1110242 ctcttttattgagtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtatatgtcctacattgatttcacccaataaaagagtgaa 1110341  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    | ||| ||||||||||||||| ||||||||||||    
T  1110342 tgttagaaagagtgctcaaaaaagagtgttgcta 1110375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 42182933 - 42183075
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| || ||||  | |||||||||| | ||    
T  42182933 ctcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaagagttag 42183032  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |     | |||||| ||||||||||||||| ||| ||||||||    
T  42183033 tgccggagagagtgttcaaaagagagtgttactagcattcctc 42183075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 256
Target Start/End: Complemental strand, 4964806 - 4964671
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtat 220  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||| || || ||   |||||||||| |||||      
T  4964806 ttttattgggtgaaatcaatgtatgtcccaccactttatgtggatttcattttcaaagtgtaggtcctacattgatcttatccaataaaagagtgagtgc 4964707  T
Q  221 taaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    || | |||||  |||||||||||| |||||| ||||    
T  4964706 tagagagagtattcaaaagagagtattgctagcatt 4964671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 37228542 - 37228688
Alignment:
Q  118 ctcttttactgggtgaaa-tcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattga 216  Q
    |||||||| ||||||||| | |||||||||||||||| |||||||||||| | ||| ||||||| |||| |||| || ||||  | |||||||| | |||    
T  37228542 ctcttttattgggtgaaaattaatgtatgtcccaccactttatgtgggttccgttttcaaagtgcaggtcctacattgatttcacccaataaaaaagtga 37228641  T
Q  217 gtattaaaaagagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    ||  || ||||||||||||||||||||||||| || | |||||||||    
T  37228642 gtgctagaaagagtgctcaaaagagagtgttggtagccttcctctta 37228688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 218
Target Start/End: Complemental strand, 31395599 - 31395481
Alignment:
Q  98 cactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatt 197  Q
    ||||||||||  ||||||  ||| |||| ||||||||||||||||||||||| ||| ||||||||| || |||||||| ||||||||| |||| || |||    
T  31395599 cactctcttt--agcactcactcctttattgggtgaaatcaatgtatgtccctccactttatgtggattccatttccatagtgtaggtcctacatttatt 31395502  T
Q  198 tttctcaataaaagattgagt 218  Q
    |  | ||||||||||||||||    
T  31395501 tcacccaataaaagattgagt 31395481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 263
Target Start/End: Complemental strand, 37719949 - 37719828
Alignment:
Q  142 tatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagag 241  Q
    ||||||||||||||||| |||| || |||||| |||||||| || |||| || ||||    |||||||||| |||||  || ||||||||||||||||||    
T  37719949 tatgtcccaccattttaagtggattccatttctaaagtgtatgtcctacattgatttcatccaataaaagagtgagtgctagaaagagtgctcaaaagag 37719850  T
Q  242 agtgttgctaacattcctctta 263  Q
    | |||||||| |||||||||||    
T  37719849 aatgttgctagcattcctctta 37719828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 262
Target Start/End: Complemental strand, 26767905 - 26767754
Alignment:
Q  110 agcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaa 209  Q
    ||||||| |||||||||||| ||||||||||||||||||||||| ||| || |||||  |||| |||| |||||  || ||  | ||||    |||||||    
T  26767905 agcacttactcttttactggatgaaatcaatgtatgtcccaccactttgtgagggttcaattttcaaattgtagactc-acaatgatttaaaccaataaa 26767807  T
Q  210 agattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||| ||||||||| | |||||| |||||||| |||||||||| |||| |||||    
T  26767806 agagtgagtattagatagagtgttcaaaagaaagtgttgctagcattactctt 26767754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 15508970 - 15508911
Alignment:
Q  201 ctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||    
T  15508970 ctcaataaaagagtgagtgttagaaagagtgttcaaaagagagtgttgctaacattcctc 15508911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 262
Target Start/End: Complemental strand, 37398949 - 37398806
Alignment:
Q  119 tcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagt 218  Q
    ||||||| || ||||||||||| |||||  ||||||||||| || |||| |||| |||||||||||| |||| |  ||||    |||||||| | | |||    
T  37398949 tcttttattgagtgaaatcaatatatgtttcaccattttatatgagttttattttcaaagtgtaggtcctacatggatttcatccaataaaaaagtaagt 37398850  T
Q  219 attaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
     ||| | ||| ||||||||| |||||||||||| ||||||||||    
T  37398849 gttagagagaatgctcaaaaaagagtgttgctagcattcctctt 37398806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 31395571 - 31395628
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    ||||||| || |||||  |||| |||||||||||||||||||||||||||||||||||    
T  31395571 caataaaggagtgagtgctaaagagagtgctcaaaagagagtgttgctaacattcctc 31395628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 24895403 - 24895339
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||||||| ||| | |||||||||||| | ||||||||||||||| ||| |||||||||||||||    
T  24895403 ctcttttaatggataaaatcaatgtatattccaccattttatgtgagttccatttccaaagtgta 24895339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 27969004 - 27968913
Alignment:
Q  171 ttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||||||||||||| ||||  ||||||  | |||||||||| |||||  || | ||||| |||||||||||||||||||| |||| |||||    
T  27969004 ttccaaagtgtaggtcctacactaatttcacccaataaaagagtgagtgctagagagagtactcaaaagagagtgttgctagcatttctctt 27968913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 28091583 - 28091674
Alignment:
Q  171 ttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||||||||||||| ||||  ||||||  | |||||||||| |||||  || | ||||| |||||||||||||||||||| |||| |||||    
T  28091583 ttccaaagtgtaggtcctacactaatttcacccaataaaagagtgagtgctagagagagtactcaaaagagagtgttgctagcatttctctt 28091674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 262
Target Start/End: Original strand, 28101815 - 28101906
Alignment:
Q  171 ttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||||||||||||| ||||  ||||||  | |||||||||| |||||  || | ||||| |||||||||||||||||||| |||| |||||    
T  28101815 ttccaaagtgtaggtcctacactaatttcacccaataaaagagtgagtgctagagagagtactcaaaagagagtgttgctagcatttctctt 28101906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 32856187 - 32856128
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||| ||||||||||||| |||| ||| |||||| ||||||||||||||||| |||||    
T  32856187 caataagagattgagtattagaaagggtgttcaaaatagagtgttgctaacatttctctt 32856128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 263
Target Start/End: Complemental strand, 1110254 - 1110192
Alignment:
Q  201 ctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    |||||||||||| ||||| ||| | ||| ||||| |||||||||||||||| |||||||||||    
T  1110254 ctcaataaaagagtgagtgttagagagaatgctcgaaagagagtgttgctagcattcctctta 1110192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 18511345 - 18511283
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtg 180  Q
    |||||||| ||| | ||||||||||||||||||| ||||||||||||||  |||| |||||||    
T  18511345 ctcttttattggataaaatcaatgtatgtcccactattttatgtgggttcaattttcaaagtg 18511283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 1107082 - 1107123
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttat 159  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  1107082 ctcttttattgggtgaaatcaatgtatgtcccaccactttat 1107123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 9470125 - 9470190
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| ||||||||||||||||||||||| ||| | ||||||  |||| ||||||||||    
T  9470125 ctcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtag 9470190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 37398938 - 37398999
Alignment:
Q  201 ctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||||||||||||||||| | |||||||| |||| ||||||||| || ||||| ||||    
T  37398938 ctcaataaaagattgagtattagagagagtgcttaaaatagagtgttgttagcattcatctt 37398999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 6315700 - 6315664
Alignment:
Q  227 gagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    |||| ||||||||||||||||||||||||||||||||    
T  6315700 gagtactcaaaagagagtgttgctaacattcctctta 6315664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 20951637 - 20951601
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||||||||||||||||||||| ||||||||||    
T  20951637 agagtgctcaaaagagagtgttgctagcattcctctt 20951601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Complemental strand, 1107069 - 1107039
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacatt 256  Q
    |||||||||||||||||||||||||||||||    
T  1107069 agagtgctcaaaagagagtgttgctaacatt 1107039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 24390023 - 24389885
Alignment:
Q  112 cacttgctcttttactgggtgaaatcaatgtatgtcccacca-ttttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaa 210  Q
    |||| ||||||||| |||||||||   |||| |||||||||| |||||||| | || ||||| |||||||| || || || |||||||   |||||||||    
T  24390023 cactcgctcttttattgggtgaaacatatgtgtgtcccaccacttttatgttgattccattttcaaagtgtggggtccacattaatttagatcaataaaa 24389924  T
Q  211 gattgagtattaaaaagagtgctcaaaagagagtgttgc 249  Q
    ||| |||| ||| |  ||| | | |||||||||||||||    
T  24389923 gatggagtgttacagcgagggttgaaaagagagtgttgc 24389885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 260
Target Start/End: Original strand, 29806200 - 29806230
Alignment:
Q  230 tgctcaaaagagagtgttgctaacattcctc 260  Q
    |||||||||||||||||||||||||||||||    
T  29806200 tgctcaaaagagagtgttgctaacattcctc 29806230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 256
Target Start/End: Complemental strand, 35316454 - 35316400
Alignment:
Q  202 tcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    ||||||| ||| ||||||| | |||||||||||||||||||||||| ||| ||||    
T  35316454 tcaataagagagtgagtatcataaagagtgctcaaaagagagtgttactagcatt 35316400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 38104267 - 38104356
Alignment:
Q  95 caacactctcttttaagcacttgctctttt--actgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    ||||||||||||||   ||||| |||||||  | ||| | |||||||||||||| |||||| ||||| |||||| |||| ||||||||||    
T  38104267 caacactctcttttggacactttctcttttttattggataaaatcaatgtatgttccaccactttatttgggttccattcccaaagtgta 38104356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 42182943 - 42182889
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattc 257  Q
    |||||||||| |||||  || | |||||||||||||||||||||||||| |||||    
T  42182943 caataaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcattc 42182889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 3804628 - 3804693
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgt-cccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||||||| ||| |||||||||||||||| |||| || ||||||| ||||| |||| |||||||||    
T  3804628 ctcttttattggatgaaatcaatgtatgtccccatcactttatgtaggtttaattttcaaagtgta 3804693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Original strand, 28898163 - 28898220
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |||||||||| |||||  || | ||||||||||||| |||||||||||| ||||||||    
T  28898163 caataaaagagtgagtgctagagagagtgctcaaaaaagagtgttgctagcattcctc 28898220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 37228552 - 37228499
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    |||||||||| |||||  || | |||||||||||||||||||||||||| ||||    
T  37228552 caataaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcatt 37228499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 12989319 - 12989367
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    |||||| ||| ||||||||| | |||||| |||||||||||||||||||    
T  12989319 caataagagagtgagtattagagagagtgttcaaaagagagtgttgcta 12989367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 33747043 - 33746987
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttc 187  Q
    |||||||||| |||||||||||| ||||| | |||| |||||| ||||| |||||||    
T  33747043 tgaaatcaatatatgtcccaccactttatattggttccatttctaaagtataggttc 33746987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 121 - 260
Target Start/End: Complemental strand, 14094134 - 14093995
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtat 220  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| || ||||  |||||| ||| | ||||| |    
T  14094134 ttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcactcaatcaaaaagtgagtgt 14094035  T
Q  221 taaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    || |||||||| ||||||||||||||||||||||||||||    
T  14094034 tacaaagagtgttcaaaagagagtgttgctaacattcctc 14093995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 118 - 262
Target Start/End: Original strand, 11430485 - 11430628
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| || | ||  | |||||||||| ||||    
T  11430485 ctcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgaattcac-caataaaagagtgag 11430583  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |  || | |||||||||||||||||||||||||| ||||||||||    
T  11430584 tgctagagagagtgctcaaaagagagtgttgctagcattcctctt 11430628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 87 - 260
Target Start/End: Complemental strand, 13388506 - 13388331
Alignment:
Q  87 aatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccacca--ttttatgtgggtttcatttccaaagtgtagg 184  Q
    |||| ||||||||||||||||| ||||||  |||||||| ||||||||||||||||||||| |||||  || |||||||||||||||| |||||||||||    
T  13388506 aatgctagcaacactctcttttgagcactcactcttttattgggtgaaatcaatgtatgtctcaccactttatatgtgggtttcattttcaaagtgtagg 13388407  T
Q  185 ttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    | |||| || ||||    |||||||| | ||||| ||| | |||||  ||||||||||||||||||| ||||||||    
T  13388406 tactacattgatttcatccaataaaaaagtgagtgttagagagagtattcaaaagagagtgttgctagcattcctc 13388331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 11135786 - 11135925
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtat 220  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| || ||||  | |||||||||| |||||      
T  11135786 ttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaagagtgagtgc 11135885  T
Q  221 taaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    || | ||||| |||||||||||||||||||| ||| ||||    
T  11135886 tagagagagtcctcaaaagagagtgttgctagcatccctc 11135925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 41918039 - 41918139
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| |||| || ||||| | |||||||||| ||||    
T  41918039 ctcttttattgggtgaaatcaatgtatgtcccaccactttatgtggattccattttcaaagtgtaggtcctacattgattttacccaataaaagagtgag 41918138  T
Q  218 t 218  Q
    |    
T  41918139 t 41918139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 41095741 - 41095602
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtatt 221  Q
    |||| |||||||||||||||||||||||| || | | |||||||| ||||| |||||||||||| |||| || ||||  | |||||||  | |||||  |    
T  41095741 tttattgggtgaaatcaatgtatgtcccatcactctgtgtgggttccattttcaaagtgtaggtcctacattgatttcacccaataaataagtgagtgct 41095642  T
Q  222 aaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
    | | |||||||||||||||||||||||||| |||||||||    
T  41095641 agagagagtgctcaaaagagagtgttgctagcattcctct 41095602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 261
Target Start/End: Complemental strand, 50773247 - 50773104
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| | |||||||| ||||| |||||| |||||||||||| |||||||||| | ||||| |||| |||||||| | |||||||||| ||||    
T  50773247 ctcttttattggataaaatcaatatatgttccaccactttatgtgggttccatttccaaaatataggtcctacattaattttacccaataaaagaatgag 50773148  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
    |  || | |||||| |||||||||||| |||||| |||| ||||    
T  50773147 tgctagagagagtgttcaaaagagagtattgctagcatttctct 50773104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 262
Target Start/End: Complemental strand, 32848719 - 32848575
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| |||||||||||| |||||||||||||| ||||||||| || ||||| |||||||||||| |||| || | ||    |||||||||| | ||    
T  32848719 ctcttttattgggtgaaatcattgtatgtcccaccactttatgtggattccattttcaaagtgtaggtcctacattgaattcaaccaataaaagagtaag 32848620  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |  || | | |||||||||||||||||||||||| || |||||||    
T  32848619 tgctagagaaagtgctcaaaagagagtgttgctagcagtcctctt 32848575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 50308915 - 50308822
Alignment:
Q  86 aaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagt 179  Q
    ||||| |||||||| |||||||| || |||  || ||||| |||||||||||||| ||||||||||||||||||||| |||||||| |||||||    
T  50308915 aaatgctagcaacattctcttttgagtactcacttttttattgggtgaaatcaatatatgtcccaccattttatgtgagtttcattaccaaagt 50308822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 260
Target Start/End: Original strand, 28109915 - 28110053
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtat 220  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||| ||||| |||||||||| | |||   | ||||    |||||||| | |||||||    
T  28109915 ttttattgggtgaaatcaatgcatgttccaccattttatgtgggttccattt-caaagtgtagatcctagaatgatttcatccaataaaaaagtgagtat 28110013  T
Q  221 taaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    || | | ||| || ||||||||||||| ||||||||||||    
T  28110014 tagagaaagtacttaaaagagagtgttcctaacattcctc 28110053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 262
Target Start/End: Complemental strand, 30679078 - 30678904
Alignment:
Q  87 aatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggtt 186  Q
    |||| ||||||||||| ||||| ||| ||  |||||| | ||| | ||||||||||||||||||||| ||| ||||||||  |||| ||||||||||  |    
T  30679078 aatgctagcaacactcacttttgagccctcactctttcaatggataaaatcaatgtatgtcccaccactttgtgtgggttcaattttcaaagtgtagact 30678979  T
Q  187 ctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    | ||  | ||||    |||||| ||| ||||| ||| | ||||||||||||| |||||||||||| ||||||||||    
T  30678978 c-acaatgatttaagccaataagagagtgagtgttagagagagtgctcaaaaaagagtgttgctagcattcctctt 30678904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 199
Target Start/End: Original strand, 44739174 - 44739243
Alignment:
Q  130 gtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttt 199  Q
    ||||||| |||||||||||||||| |||||||| |||  ||||||||||||||||| |||| ||||||||    
T  44739174 gtgaaattaatgtatgtcccaccactttatgtgagttgtatttccaaagtgtaggtcctacattaatttt 44739243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 5291717 - 5291625
Alignment:
Q  156 ttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttg 248  Q
    |||||||| ||  |||||||||||||||| || |||||||||||  ||||||||||| ||||| || ||||||||| | |||||| |||||||    
T  5291717 ttatgtggattctatttccaaagtgtaggctccacgttaattttattcaataaaagagtgagtgttgaaaagagtgttaaaaagaaagtgttg 5291625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Original strand, 5848089 - 5848161
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctac 190  Q
    ||||||||  ||||||||| |||||||||| ||| |||||||||||||| |||||  ||||||||||||||||    
T  5848089 ctcttttatggggtgaaattaatgtatgtctcactattttatgtgggttccatttttaaagtgtaggttctac 5848161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 43832350 - 43832458
Alignment:
Q  155 tttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaaca 254  Q
    ||||||||||||||||||||||||||||| | |||| || ||||  |  ||||||||| ||| |  || |||||||| |||||||||||| ||| || ||    
T  43832350 tttatgtgggtttcatttccaaagtgtagatcctacattgatttcgccgaataaaagagtgaatgctagaaagagtgttcaaaagagagttttgatatca 43832449  T
Q  255 ttcctctta 263  Q
    |||||||||    
T  43832450 ttcctctta 43832458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 9165346 - 9165400
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcattt 172  Q
    |||||||| |||||||||||||||||||||| |||| |||||||| |||||||||    
T  9165346 ctcttttattgggtgaaatcaatgtatgtcctaccactttatgtgagtttcattt 9165400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 50539135 - 50539216
Alignment:
Q  85 gaaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtt 166  Q
    ||||||||||||||||||  |||| | ||||  |||||||| ||| ||||||||| |||||| |||||| ||||||||||||    
T  50539135 gaaatgttagcaacactcatttttcaacactcactcttttattggatgaaatcaaagtatgttccaccactttatgtgggtt 50539216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 4578713 - 4578646
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatg-tgggtttcatttccaaagtgtagg 184  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||  ||||  |||||||||||||||||    
T  4578713 ctcttttattgggtgaaatcaatgtaggtcccaccactttatgcggggtcccatttccaaagtgtagg 4578646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 22540393 - 22540477
Alignment:
Q  97 acactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||  ||||||  || ||||| ||| ||||||||||||||||||||||| |||||| | |||  |||||||||||||||    
T  22540393 acactctcttt--agcactcactattttattggatgaaatcaatgtatgtcccaccactttatgcgagttctatttccaaagtgtag 22540477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 41958118 - 41958192
Alignment:
Q  109 aagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||  ||| |||| ||| ||||||||||||||||||||||||||| || |||||  |||| ||||||||||    
T  41958118 aagcactcactcatttattggatgaaatcaatgtatgtcccaccattttgtgggggttcaattttcaaagtgtag 41958192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 43851167 - 43851117
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcattt 172  Q
    |||| ||||||||||||||||||||||||||| ||||| |||||| |||||    
T  43851167 tttattgggtgaaatcaatgtatgtcccaccactttatatgggttccattt 43851117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 44739183 - 44739113
Alignment:
Q  192 ttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||  ||||| |||||| |||||  || | |||||| ||||||||||||||||||||||||||||||    
T  44739183 ttaatttcactcaagaaaagagtgagtgctagagagagtgttcaaaagagagtgttgctaacattcctctt 44739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 2225268 - 2225333
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||||||   ||| ||||||||||    
T  2225268 ctcttttattggatgaaatcaatgtatgtcccaccactttgtgtgggttcggtttacaaagtgtag 2225333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 11430495 - 11430438
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |||||||||| |||||  || ||||||||||||||||||||||||| || ||||||||    
T  11430495 caataaaagagtgagtgctagaaagagtgctcaaaagagagtgttgttagcattcctc 11430438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 212
Target Start/End: Complemental strand, 24436590 - 24436509
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaaga 212  Q
    |||||||||||||| |||||||| ||||||||||||  |||| |||||||| ||| |||| || ||||  | ||||||||||    
T  24436590 tgaaatcaatgtatatcccaccactttatgtgggttctattttcaaagtgtgggtcctacattgatttcacccaataaaaga 24436509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 15660937 - 15661001
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||||||| ||| | ||||||||| ||||||||||| |||||| |||||| ||||||||| ||||    
T  15660937 ctcttttattggataaaatcaatgcatgtcccaccactttatgcgggttttatttccaaaatgta 15661001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 179
Target Start/End: Original strand, 24911520 - 24911568
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagt 179  Q
    ||||||| ||||||||||||||| ||| ||||||||| |||||||||||    
T  24911520 tgaaatccatgtatgtcccaccactttttgtgggttttatttccaaagt 24911568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 44271942 - 44272027
Alignment:
Q  96 aacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||||||||  ||||||| || ||||| ||  |||||||||||||||| |||||||||| ||| ||||  |||| ||||||||||    
T  44271942 aacactctcttt--agcacttactattttattgaatgaaatcaatgtatgttccaccattttttgtaggttcaattttcaaagtgtag 44272027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 15523235 - 15523319
Alignment:
Q  97 acactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||  ||||||  || ||||| ||| ||||||||||||||||||||||| |||||| | |||  ||||| |||||||||    
T  15523235 acactctcttt--agcactcactattttattggatgaaatcaatgtatgtcccaccactttatgcgagttctatttctaaagtgtag 15523319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 15531229 - 15531313
Alignment:
Q  97 acactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||  ||||||  || ||||| ||| ||||||||||||||||||||||| |||||| | |||  ||||| |||||||||    
T  15531229 acactctcttt--agcactcactattttattggatgaaatcaatgtatgtcccaccactttatgcgagttctatttctaaagtgtag 15531313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 19101756 - 19101672
Alignment:
Q  97 acactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||  ||||||  || ||||| ||| ||||||||||||||||||||||| |||||| | |||  |||| ||||||||||    
T  19101756 acactctcttt--agcactcactattttattggatgaaatcaatgtatgtcccaccactttatgcgagttctattttcaaagtgtag 19101672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Complemental strand, 11135770 - 11135736
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |||||||||||||||||||||||||| ||||||||    
T  11135770 agagtgctcaaaagagagtgttgctagcattcctc 11135736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Original strand, 33114030 - 33114080
Alignment:
Q  133 aaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||| |||||||||||||||||||||| ||||  |||| ||||||||||    
T  33114030 aaatcattgtatgtcccaccattttatgtaggttcaattttcaaagtgtag 33114080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 41918159 - 41918109
Alignment:
Q  93 agcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgta 143  Q
    |||||||||||||||| ||||||  |||||||| ||||| |||||||||||    
T  41918159 agcaacactctcttttgagcactcactcttttattgggtaaaatcaatgta 41918109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 28218184 - 28218119
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| ||||||||||||||||| ||||| ||| ||||| ||  |||| ||||||||||    
T  28218184 ctcttttattggatgaaatcaatgtatgtctcaccactttgtgtggattcaattttcaaagtgtag 28218119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 33193098 - 33193159
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||| ||| |||||||||||||||| |||||||||| || |||||  |||| ||||||||||    
T  33193098 tttattggatgaaatcaatgtatgtgccaccattttgtgagggttcaattttcaaagtgtag 33193159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 253
Target Start/End: Original strand, 44760807 - 44760836
Alignment:
Q  224 aaagagtgctcaaaagagagtgttgctaac 253  Q
    ||||||||||||||||||||||||||||||    
T  44760807 aaagagtgctcaaaagagagtgttgctaac 44760836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 13388477 - 13388513
Alignment:
Q  227 gagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  13388477 gagtgctcaaaagagagtgttgctagcattcatctta 13388513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 26980398 - 26980354
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtg 162  Q
    |||| ||| ||| ||||||||||||||||||||||||||| ||||    
T  26980398 ctctattattggatgaaatcaatgtatgtcccaccattttgtgtg 26980354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Original strand, 39039481 - 39039537
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcct 259  Q
    |||||||||| |||||  ||||||||||| | ||||| ||||||||||| |||||||    
T  39039481 caataaaagagtgagtgctaaaaagagtgttgaaaagtgagtgttgctagcattcct 39039537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 45426923 - 45426811
Alignment:
Q  86 aaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggt 185  Q
    ||||| ||| ||||||||||||| | || ||  |||| || ||  |||||| ||||||||| ||||||||||||||| |||  ||||  ||||||||||     
T  45426923 aaatgctagtaacactctcttttgaacattttttcttatattgaatgaaattaatgtatgttccaccattttatgtgtgttctatttttaaagtgtagga 45426824  T
Q  186 tctacgttaattt 198  Q
     |||| |||||||    
T  45426823 cctacattaattt 45426811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 118 - 262
Target Start/End: Complemental strand, 25428615 - 25428471
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| || |||||||||||||||||||||||| |||||||||||| |||||||||||||||| | |||| || |||||   |||||||||| ||||    
T  25428615 ctcttttattgtgtgaaatcaatgtatgtcccaccactttatgtgggttacatttccaaagtgtagatcctacattgattttatccaataaaagagtgag 25428516  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |  |||| |||||||||||||||||||||||||| |||| |||||    
T  25428515 tgctaaagagagtgctcaaaagagagtgttgctatcatttctctt 25428471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 110 - 261
Target Start/End: Original strand, 13919816 - 13919967
Alignment:
Q  110 agcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaa 209  Q
    |||||| |||| |||| ||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||| || ||||  | |||||||    
T  13919816 agcactcgctcatttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtaggtcctacattgatttcacccaataaa 13919915  T
Q  210 agattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
     || |||||  || | |||||||||||||||||||||||||| |||||||||    
T  13919916 tgagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcctct 13919967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 87 - 265
Target Start/End: Complemental strand, 19841052 - 19840874
Alignment:
Q  87 aatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggtt 186  Q
    |||| ||||||||||||||||| |||| |  |||||||| ||| |||||||||||||||||  |||| |||||||||||| ||||||||||||||||||     
T  19841052 aatgctagcaacactctctttttagcattcactcttttattggttgaaatcaatgtatgtcttaccactttatgtgggttccatttccaaagtgtaggtc 19840953  T
Q  187 ctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctcttaat 265  Q
    |||  || ||||  | |||||||||| |||||  || | ||||||||||||| |||||||||||| |||||||| ||||    
T  19840952 ctatattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaatagagtgttgctagcattcctcataat 19840874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 45909503 - 45909633
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtat 220  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||| || ||||| | |||||||||| ||||| |    
T  45909503 ttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaattgtaggtcctacattgattttacccaataaaagagtgagtgt 45909602  T
Q  221 taaaaagagtgctcaaaagagagtgttgcta 251  Q
    || | |||||  |||||||||||||||||||    
T  45909603 tagagagagtattcaaaagagagtgttgcta 45909633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 26703576 - 26703436
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||||||||||||||||||| ||||| |||||||||||| |||||| ||||||||||| |||| || ||||  | |||||||||| ||||    
T  26703576 ctcttttattgggtgaaatcaatgtatgtctcaccactttatgtgggttccatttctaaagtgtaggtcctacatttatttcacccaataaaagagtgag 26703477  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcc 258  Q
    |  || | |||||||||| ||||||||||||||| ||||||    
T  26703476 tgctagagagagtgctcagaagagagtgttgctagcattcc 26703436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 26189962 - 26190077
Alignment:
Q  133 aaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgc 232  Q
    ||||||||| |||||||||||  | ||||||||||||||| |||||||||||| ||||||| ||||| | |||||||||| ||||| ||| | | ||||     
T  26189962 aaatcaatgcatgtcccaccacctcatgtgggtttcattttcaaagtgtaggtcctacgttgattttacccaataaaagagtgagtgttagagaaagtgt 26190061  T
Q  233 tcaaaagagagtgttg 248  Q
    ||||||||||||||||    
T  26190062 tcaaaagagagtgttg 26190077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 14759687 - 14759829
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| || ||||||||||| |||||||||||| |||| || ||||  ||||||||||||||||| |||| |||||||    |||||||||| || |    
T  14759687 ctcttttattgagtgaaatcaatttatgtcccaccactttaggtaggttctatttccaaagtgtaggtcctacattaatttcatccaataaaagagtggg 14759786  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |  ||   |||||||||||||||||||||||||| ||||||||    
T  14759787 tgctagggagagtgctcaaaagagagtgttgctagcattcctc 14759829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 210
Target Start/End: Complemental strand, 17354662 - 17354571
Alignment:
Q  119 tcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaa 210  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||| || ||||| | ||||||||    
T  17354662 tcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttctatttccaaagtgtaggtcctacattgattttacccaataaaa 17354571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 19494475 - 19494410
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  19494475 ctcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtag 19494410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 129 - 186
Target Start/End: Original strand, 22786206 - 22786263
Alignment:
Q  129 ggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggtt 186  Q
    ||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||    
T  22786206 ggtgaaatcaatgtatgtctcaccactttatgtgggttccatttccaaagtgtaggtt 22786263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 25428605 - 25428659
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattc 257  Q
    |||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  25428605 caataaaagagtgagtactaaaaagagtgctcaaaagagagtgttgctagcattc 25428659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 6442293 - 6442354
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctcttaa 264  Q
    |||||||||| ||||||||||| | |||| |||||||| ||||||||||||||| |||||||    
T  6442293 caataaaagagtgagtattaaagatagtgttcaaaagaaagtgttgctaacattactcttaa 6442354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 17354653 - 17354711
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
    |||||||||| ||||| ||| | ||||||||||||| |||||||||||| |||||||||    
T  17354653 caataaaagaatgagtgttagagagagtgctcaaaaaagagtgttgctagcattcctct 17354711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 17749738 - 17749884
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| | |||||||| |||||||||||| ||||| ||| ||||||||||||| |||| |  | || || ||||  | |||| | ||| ||||    
T  17749738 ctcttttattggataaaatcaatatatgtcccaccactttatatggatttcatttccaaaatgtatgacccacattgatttaacccaatgagagagtgag 17749837  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctcttaa 264  Q
    | ||| | ||||||  |||||||||||||||||| || | |||||||    
T  17749838 tgttagagagagtgtccaaaagagagtgttgctagcactactcttaa 17749884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 27888410 - 27888468
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
    |||||| ||| ||||| ||| | |||||||||||||||||||||||||| |||||||||    
T  27888410 caataagagagtgagtgttagagagagtgctcaaaagagagtgttgctagcattcctct 27888468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 22189983 - 22190048
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| ||||||||||||||| ||||||| ||| ||||||||  |||| ||||||||||    
T  22189983 ctcttttattggatgaaatcaatgtatggcccaccactttgtgtgggttcaattttcaaagtgtag 22190048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 31502600 - 31502535
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| ||||||||| ||||||||||||||||| |||| |||  |||| ||||||||||    
T  31502600 ctcttttattggatgaaatcaaggtatgtcccaccattttgtgtgcgttcaattttcaaagtgtag 31502535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 210
Target Start/End: Complemental strand, 31959933 - 31959860
Alignment:
Q  138 aatgtatgtcccacc-attttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaa 210  Q
    ||||||||||||||| | ||||||||||||  ||||||||||||| ||| |||| |||||||  ||||||||||    
T  31959933 aatgtatgtcccacccactttatgtgggttctatttccaaagtgtgggtcctacattaatttcactcaataaaa 31959860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 33008148 - 33008213
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| |||||||| |||||||||||||| ||| ||||||||  |||||||| ||||||    
T  33008148 ctcttttattggatgaaatcattgtatgtcccaccactttgtgtgggttctatttccaatgtgtag 33008213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 46067995 - 46068048
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtagg 184  Q
    |||||||||||||||| |||||| |||||||||||| ||||||| || ||||||    
T  46067995 tgaaatcaatgtatgttccaccactttatgtgggttccatttccgaattgtagg 46068048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 11824115 - 11824179
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||| | ||  |||| |||||||||    
T  11824115 ctcttttattggatgaaatcaatgtatgtcccaccattttgtgtagcttcaattttcaaagtgta 11824179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 32205120 - 32205168
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtt 166  Q
    |||||||| ||| |||||||||||||||||| |||||||| ||||||||    
T  32205120 ctcttttattggatgaaatcaatgtatgtcctaccattttgtgtgggtt 32205168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 181
Target Start/End: Original strand, 7775044 - 7775107
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgt 181  Q
    |||||||| ||| ||||||||||||||||||||||| ||| |||| |||  |||| ||||||||    
T  7775044 ctcttttattggatgaaatcaatgtatgtcccaccactttgtgtgagttcaattttcaaagtgt 7775107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 256
Target Start/End: Complemental strand, 25686876 - 25686834
Alignment:
Q  214 tgagtattaaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    ||||||||| ||||| || ||||||||||||||||||||||||    
T  25686876 tgagtattagaaagaatgttcaaaagagagtgttgctaacatt 25686834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 37549653 - 37549619
Alignment:
Q  228 agtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||||||||||||||||||| ||||||||||    
T  37549653 agtgctcaaaagagagtgttgctagcattcctctt 37549619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 21963237 - 21963172
Alignment:
Q  147 cccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaaga 212  Q
    |||||||||||||||| ||| |||||||||||||||| | |||| || ||||  | ||||||||||    
T  21963237 cccaccattttatgtgagttccatttccaaagtgtagatcctacattgatttcacccaataaaaga 21963172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 22786182 - 22786149
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcct 259  Q
    |||||||||||||||||||||||||| |||||||    
T  22786182 agagtgctcaaaagagagtgttgctagcattcct 22786149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 24539259 - 24539126
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| | |||||||| |||||||||||| ||||| ||| || |||||||||| |||| |  | || || ||||  | |||| | ||| ||||    
T  24539259 ctcttttattggataaaatcaatatatgtcccaccactttatatggattccatttccaaaatgtatgacccacattgatttaacccaatgagagagtgag 24539160  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    | ||| | ||||||  ||||||||||||||||||    
T  24539159 tgttagagagagtgtccaaaagagagtgttgcta 24539126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 11692223 - 11692287
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||||||| ||| |||||||||||||||||| |||| ||| ||| ||||  |||| |||||||||    
T  11692223 ctcttttattggatgaaatcaatgtatgtcctaccactttgtgtaggttcaattttcaaagtgta 11692287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 262
Target Start/End: Complemental strand, 27888313 - 27888277
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  27888313 agagtgctcaaaagtgagtgttgctagcattcctctt 27888277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Original strand, 27949402 - 27949454
Alignment:
Q  204 aataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    ||||| ||| ||||||||| | |||||| ||||||||||||||||||| ||||    
T  27949402 aataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 27949454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 19090351 - 19090209
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| || | ||    |||||||||| ||||    
T  19090351 ctcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgaattcaaccaataaaagagtgag 19090252  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |  || | |||||||||||||||||||||||||| ||||||||    
T  19090251 tgctagagagagtgctcaaaagagagtgttgctagcattcctc 19090209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 130 - 262
Target Start/End: Original strand, 10060915 - 10061047
Alignment:
Q  130 gtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagag 229  Q
    |||||||||||||||||||| ||| |||||||||||| ||||| |||||||||||| |||| || || |  | |||||||| | ||||| ||| | ||||    
T  10060915 gtgaaatcaatgtatgtcccgccactttatgtgggttccattttcaaagtgtaggtcctacattgatctcacccaataaaaaagtgagtgttagagagag 10061014  T
Q  230 tgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||||||||||||||||||||| |||||||||    
T  10061015 tgctcaaaagagagtgttgctaatattcctctt 10061047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 19737571 - 19737431
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||| | |||||||||||||||||| ||| | || ||||||||||||||||||||||||||||||| |||| || ||||    |||||||||| ||||    
T  19737571 ctctttaattgggtgaaatcaatgtatatcctatcactttatgtgggtttcatttccaaagtgtaggtcctacattgatttgagccaataaaagagtgag 19737472  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcc 258  Q
    |  || | ||| || ||||||||||||||||||| ||||||    
T  19737471 tgatagagagaatgttcaaaagagagtgttgctagcattcc 19737431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 218
Target Start/End: Complemental strand, 6992446 - 6992307
Alignment:
Q  79 ataagggaaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaag 178  Q
    ||||| |||||| ||||||||||||||||| ||||||  ||| |||| | | ||  |||| | |||||| ||||| |||||||| |||||||||||||||    
T  6992446 ataagagaaatgctagcaacactctcttttgagcactcactcatttatttgatgggatcagtttatgtctcaccactttatgtgagtttcatttccaaag 6992347  T
Q  179 tgtaggttctacgttaatttttctcaataaaagattgagt 218  Q
    ||||||| |||| || ||||| |||||||||||| |||||    
T  6992346 tgtaggtcctacattgattttactcaataaaagaatgagt 6992307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 35128859 - 35128724
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||| ||||||||||||||||||||| |||||||||||| ||||| |||||||||||| |||| || ||||  | |||||||| | ||||    
T  35128859 ctcttttattgggtaaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtaggtcctacattgatttcacccaataaaaaaatgag 35128760  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattc 257  Q
    | ||    |||| |||||||||||||||||| || |||||    
T  35128759 tgtt----agagagctcaaaagagagtgttgttagcattc 35128724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 198
Target Start/End: Complemental strand, 6531434 - 6531354
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaattt 198  Q
    |||||||| ||||||||||||||||||||||||| | |||||||| ||| ||||||| |||||||||| |||| |||||||    
T  6531434 ctcttttattgggtgaaatcaatgtatgtcccactactttatgtgagttccatttccgaagtgtaggtcctacattaattt 6531354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 256
Target Start/End: Original strand, 4595786 - 4595922
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| || |||||||||||||||||| ||||| ||| | |||||| ||||| ||||||||| || |||| |||||||  |  || |||||| ||||    
T  4595786 ctcttttattgagtgaaatcaatgtatgtctcaccactttttatgggttccattttcaaagtgtaagtcctacattaatttcaccaaagaaaagagtgag 4595885  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    |  |  ||||||| |||||||||||||||||||| ||||    
T  4595886 tgct--aaagagttctcaaaagagagtgttgctagcatt 4595922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 199
Target Start/End: Original strand, 373446 - 373524
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttt 199  Q
    ||||| ||||| |||||||||||||||||| || ||||||||| || ||||| ||||| |||||| |||| || |||||    
T  373446 ttttattgggtaaaatcaatgtatgtcccagcactttatgtggattccattttcaaagggtaggtcctacattgatttt 373524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 10060912 - 10060854
Alignment:
Q  204 aataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||||||| ||| | ||| |||||||| ||||||||||||||||||| ||||||||||    
T  10060912 aataaaagagtgattgttataaagagtgttcaaaagagagtgttgctagcattcctctt 10060854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 16436207 - 16436253
Alignment:
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctcttaa 264  Q
    |||||||||||||| | |||||||||||||||||||||| |||||||    
T  16436207 tattaaaaagagtgtttaaaagagagtgttgctaacattactcttaa 16436253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 32112850 - 32112788
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||| ||| ||||||||||| ||||| ||||||||| ||||||||| |||| ||||||||||    
T  32112850 ttttattggatgaaatcaatgcatgtcacaccattttgtgtgggttttattttcaaagtgtag 32112788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 256
Target Start/End: Complemental strand, 32599084 - 32598947
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| || |||  ||||||||||| ||| ||| |||||||   ||||||||||||||| ||| ||  | ||||   ||||||||||| ||||    
T  32599084 ctcttttattggatggaatacatgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagtgag 32598986  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    ||||||| ||| || | |||||||| |||||||||||||    
T  32598985 tattaaagagaatgtttaaaagagaatgttgctaacatt 32598947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 34905380 - 34905445
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| ||||||||||||||||||||||| ||| | ||||||  |||| ||||||||||    
T  34905380 ctcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtag 34905445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 21987317 - 21987401
Alignment:
Q  97 acactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||  ||||||  || ||||| ||| |||||||||||||| |||||||| |||||| | |||  |||||||||||||||    
T  21987317 acactctcttt--agcactcactattttattggatgaaatcaatgtatatcccaccactttatgcgagttctatttccaaagtgtag 21987401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 22261518 - 22261568
Alignment:
Q  127 tgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaa 177  Q
    ||||||||||||||||||||| |||  |||||||| |||||||||| ||||    
T  22261518 tgggtgaaatcaatgtatgtcacactgttttatgtaggtttcattttcaaa 22261568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 143
Target Start/End: Original strand, 6992280 - 6992337
Alignment:
Q  86 aaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgta 143  Q
    ||||| ||||||||||||||||||||||||   ||||||| || || |||||||||||    
T  6992280 aaatgctagcaacactctcttttaagcactcattcttttattgagtaaaatcaatgta 6992337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 19090364 - 19090401
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    ||||||||||||||||||||||| || |||||||||||    
T  19090364 agagtgctcaaaagagagtgttgttagcattcctctta 19090401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 6992409 - 6992445
Alignment:
Q  227 gagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  6992409 gagtgctcaaaagagagtgttgctagcatttctctta 6992445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 10591569 - 10591501
Alignment:
Q  130 gtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaattt 198  Q
    |||||| || ||||| || ||||||||||||||||||| |||| ||||| ||||| || ||||| ||||    
T  10591569 gtgaaagcagtgtatctctcaccattttatgtgggttttattttcaaagcgtaggatccacgttgattt 10591501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 12327372 - 12327283
Alignment:
Q  85 gaaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaa 176  Q
    |||||| |||||||||||||| |  |||| |  |||||||| ||| |  ||||||||||||||| |||||||| ||||||||  ||||||||    
T  12327372 gaaatgctagcaacactctctct--agcagtcactcttttattggatagaatcaatgtatgtcctaccattttgtgtgggttctatttccaa 12327283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 16436122 - 16436173
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||||||||||| ||||||||||| ||||||||  ||||| |||||||||    
T  16436122 tgaaatcaatgtatg-cccaccattttgtgtgggttctatttctaaagtgtag 16436173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 263
Target Start/End: Complemental strand, 42224727 - 42224582
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||| || ||||  | |||||||||| ||||    
T  42224727 ctcttttattaggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaagagtgag 42224628  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    |  |  | ||||| |||||||||||||||||||| |||||||||||    
T  42224627 tgctggagagagttctcaaaagagagtgttgctagcattcctctta 42224582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 40971589 - 40971447
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| || |||||||||||||||||||||||| |||||||  ||||||||||||||||||||||  ||| || ||||| | |||||||| | ||||    
T  40971589 ctcttttattgagtgaaatcaatgtatgtcccaccactttatgtaagtttcatttccaaagtgtaggtcttacattgattttacccaataaaatagtgag 40971490  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    | ||| | |||||| ||||||||||||||||||| || |||||    
T  40971489 tgttagatagagtgttcaaaagagagtgttgctagcactcctc 40971447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 4959322 - 4959464
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||||| ||||| ||||||||||||  ||| || ||||  | |||||||||| ||||    
T  4959322 ctcttttattgggtgaaatcaatgtatgtctcatcattttatgtgggttacattttcaaagtgtaggtgatacattgatttcccccaataaaagagtgag 4959421  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |  || | |||||||||||||||||||||| ||| || |||||    
T  4959422 tgctagagagagtgctcaaaagagagtgttactagcactcctc 4959464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 24915084 - 24915241
Alignment:
Q  103 tcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttct 202  Q
    |||||| |||||| ||||||||| | |||||||||||| |||||||||||| |||||||||||| ||||| ||||||||| || |||| || ||||  |     
T  24915084 tcttttgagcactcgctcttttattaggtgaaatcaatatatgtcccaccactttatgtgggttccattttcaaagtgtatgtcctacattgatttcacc 24915183  T
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||||| |||||  |  | |||||||| |||||||||||||||||  |||||||||    
T  24915184 caataaaagagtgagtgct--agagagtgcttaaaagagagtgttgctagtattcctctt 24915241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 127 - 260
Target Start/End: Original strand, 26072156 - 26072289
Alignment:
Q  127 tgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaa 226  Q
    ||||||||||||||||||||| ||||| |||||||||  |||||||||||||||||||| | || ||  |||  | |||||||||| |||||  || | |    
T  26072156 tgggtgaaatcaatgtatgtctcaccactttatgtggaattcatttccaaagtgtaggtcccacattgttttcacccaataaaagagtgagtgctagaga 26072255  T
Q  227 gagtgctcaaaagagagtgttgctaacattcctc 260  Q
    || |||||||||||||||||||||| ||||||||    
T  26072256 gaatgctcaaaagagagtgttgctagcattcctc 26072289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 24990915 - 24991072
Alignment:
Q  103 tcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttct 202  Q
    |||||| | |||| ||||||||| |||||||||||||| |||||||||||| ||||||| |||| ||||| ||||||||| || |||| || ||||  |     
T  24990915 tcttttgaacactcgctcttttattgggtgaaatcaatatatgtcccaccactttatgtaggttccattttcaaagtgtatgtcctacattgatttcacc 24991014  T
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||||| |||||  |  | |||||||| |||||||||||||||||  |||||||||    
T  24991015 caataaaagagtgagtgct--agagagtgcttaaaagagagtgttgctagtattcctctt 24991072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 17568838 - 17568696
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| || ||||||||||| |||||||||||| |||| || ||||  ||||||||||||||||| |||| |||||||    |||||||||| || |    
T  17568838 ctcttttattgagtgaaatcaatttatgtcccaccactttaggtaggttctatttccaaagtgtaggtcctacattaatttcatccaataaaagagtggg 17568739  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |  ||   |||||||||||||||||||||||||| ||||||||    
T  17568738 tgctagggagagtgctcaaaagagagtgttgctagcattcctc 17568696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 259
Target Start/End: Complemental strand, 13456301 - 13456162
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    ||||||||  || |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||  |||| || ||||  |  ||||||||| ||||    
T  13456301 ctcttttatcggatgaaatcaatgtatttcccaccattttatgtgggttccattttcaaagtgtaggacctacattgatttcacctaataaaagagtgag 13456202  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcct 259  Q
    |  |  | ||||| ||||||||||||||||||||||| ||||    
T  13456201 tgct--agagagtactcaaaagagagtgttgctaacactcct 13456162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 262
Target Start/End: Complemental strand, 4959332 - 4959273
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||||| || |||||| | |||||||||||||||||||||||||| ||||||||||    
T  4959332 caataaaagagtgggtattagagagagtgctcaaaagagagtgttgctagcattcctctt 4959273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 34818245 - 34818368
Alignment:
Q  133 aaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgc 232  Q
    ||||||||||||||  ||||  |||||||||||| |||||| ||||| ||||| |||| || ||||| |  ||||||| | ||||| ||| | |||||||    
T  34818245 aaatcaatgtatgtgtcaccgctttatgtgggttccatttctaaagtataggtcctacattgattttaccaaataaaaaagtgagtgttagagagagtgc 34818344  T
Q  233 tcaaaagagagtgttgctaacatt 256  Q
    |||||||||| |||| ||| ||||    
T  34818345 tcaaaagagaatgttcctagcatt 34818368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 5413873 - 5413808
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||||||  |||| ||||||||||    
T  5413873 ctcttttattggatgaaatcaatgtatgtcccaccactttgtgtgggttcaatttacaaagtgtag 5413808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 8912554 - 8912698
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| | ||| |||| ||| |||||||| ||| ||| |||||||||||||||||||||||| ||  ||  || ||||  |  ||||||||| ||||    
T  8912554 ctcttttatttggtaaaattaatatatgtccctccactttctgtgggtttcatttccaaagtgtatgtcatatattgatttcacctaataaaagagtgag 8912653  T
Q  218 tattaaaaaga--gtgctcaaaagagagtgttgctaacattcctc 260  Q
    |  || | |||  |||||||||||||| |||||||||||||||||    
T  8912654 tgatagagagagtgtgctcaaaagagactgttgctaacattcctc 8912698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 262
Target Start/End: Original strand, 32050352 - 32050495
Alignment:
Q  119 tcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagt 218  Q
    ||||||| |||||||||| ||| |||||| || || |||||||||||| ||||| |||||||| |    ||| || ||||  | |||||||| | |||||    
T  32050352 tcttttattgggtgaaattaatatatgtctcatcactttatgtgggttccattttcaaagtgtggaacatacattgatttcacccaataaaaaagtgagt 32050451  T
Q  219 attaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
      || | ||| |||||||||||||||||||||| ||||| ||||    
T  32050452 gctagagagaatgctcaaaagagagtgttgctagcattcatctt 32050495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 264
Target Start/End: Original strand, 34368511 - 34368549
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctcttaa 264  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34368511 agagtgctcaaaagagagtgttgctagcattcctcttaa 34368549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 10142112 - 10142047
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| | ||||||||||||||||||||| ||| ||| |||| ||||| ||||||||||    
T  10142112 ctcttttattggataaaatcaatgtatgtcccaccactttgtgttggttccattttcaaagtgtag 10142047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 26072153 - 26072112
Alignment:
Q  207 aaaagattgagtattaaaaagagtgctcaaaagagagtgttg 248  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  26072153 aaaagaatgagtattagaaagagtgctcaaaagagagtgttg 26072112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 28155844 - 28155771
Alignment:
Q  110 agcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||| |||||||| ||  |||||||||||||||| | |||||||| | ||||||| |||| ||||||||||    
T  28155844 agcacttactcttttattgaatgaaatcaatgtatgttcaaccattttttatgggtttaattttcaaagtgtag 28155771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 42224718 - 42224774
Alignment:
Q  204 aataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    ||||||||| |||||  || | |||||||||||||||||||||||||| ||||||||    
T  42224718 aataaaagagtgagtgctagagagagtgctcaaaagagagtgttgctagcattcctc 42224774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 2443717 - 2443682
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctct 261  Q
    |||||||||||||||||||||||||| |||||||||    
T  2443717 agagtgctcaaaagagagtgttgctagcattcctct 2443682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 27592607 - 27592523
Alignment:
Q  97 acactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||  ||||||  || ||||| ||| ||||||||||||||||| ||||| |||||| | |||  |||||||||||||||    
T  27592607 acactctcttt--agcactcactattttattggatgaaatcaatgtatgtctcaccactttatgcgagttctatttccaaagtgtag 27592523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 251
Target Start/End: Original strand, 32401155 - 32401294
Alignment:
Q  112 cacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaag 211  Q
    ||||| |||| ||| || ||||||| ||||||| | |||||| |||||||||||| |||||  |||  ||||| || || |||||||   ||||  ||||    
T  32401155 cacttactctcttattgagtgaaattaatgtatattccaccactttatgtgggttccattttaaaaacgtaggatccacattaatttaagtcaactaaag 32401254  T
Q  212 attgagtattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    | ||||||||| | |||||| ||||||||  |||||||||    
T  32401255 agtgagtattagagagagtgttcaaaagaaggtgttgcta 32401294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 34384826 - 34384783
Alignment:
Q  119 tcttttactgggtgaaatcaatgtatgtcccaccattttatgtg 162  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||    
T  34384826 tcttttattgggtgaaatcaatgtatgtcccactattttgtgtg 34384783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 40971577 - 40971636
Alignment:
Q  201 ctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |||||||||||| |||||  || | ||||||||||||||||||||||| || ||||||||    
T  40971577 ctcaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgttagcattcctc 40971636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 17537223 - 17537173
Alignment:
Q  133 aaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||||||||||||||||| ||| ||| ||||| |||| ||||||||||    
T  17537223 aaatcaatgtatgtcccaccaatttttgttggtttaattttcaaagtgtag 17537173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Complemental strand, 6263914 - 6263881
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcct 259  Q
    |||||||||||||||||||||| |||||||||||    
T  6263914 agagtgctcaaaagagagtgttactaacattcct 6263881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 28611831 - 28611771
Alignment:
Q  202 tcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||||||||| |  || ||| | |||||||||||||||||||||||||| |||| |||||    
T  28611831 tcaataaaagagttggtgttagagagagtgctcaaaagagagtgttgctagcatttctctt 28611771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 34384741 - 34384701
Alignment:
Q  205 ataaaagattgagtattaaaaagagtgctcaaaagagagtg 245  Q
    |||||||| ||||||||||| |||||| |||||||||||||    
T  34384741 ataaaagagtgagtattaaagagagtgttcaaaagagagtg 34384701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 41105610 - 41105562
Alignment:
Q  215 gagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    |||||||| | |||||||||||||||||||||||||  |||| ||||||    
T  41105610 gagtattagagagagtgctcaaaagagagtgttgctcgcattactctta 41105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 119 - 251
Target Start/End: Complemental strand, 24749045 - 24748913
Alignment:
Q  119 tcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagt 218  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| || ||||    |||||||||| |||||    
T  24749045 tcttttatggggtgatatcaatgtatgtcccaccattttatgtgggttccatttctaaagtgtaggtcctacattgatttcatccaataaaagagtgagt 24748946  T
Q  219 attaaaaagagtgctcaaaagagagtgttgcta 251  Q
     ||| | ||||||||||||||||||||||||||    
T  24748945 gttagagagagtgctcaaaagagagtgttgcta 24748913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 37600266 - 37600124
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||| || | ||    |||||||||| || |    
T  37600266 ctcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttctaaagtgtaggtcctacattgaattcaaccaataaaagagtggg 37600167  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |  || | |||||||||||||||||||||||||| ||||||||    
T  37600166 tgctagagagagtgctcaaaagagagtgttgctagcattcctc 37600124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 54141025 - 54140887
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtatt 221  Q
    |||| ||||||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||||||||| || ||||    ||||||| || |||||  |    
T  54141025 tttattgggtgaaatcaatgtatgtcccaccactttacgtgggttccattttcaaagtgtaggttctacattgatttcatccaataaatgagtgagtgct 54140926  T
Q  222 aaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    | | | |||||||||||||||||||||||| ||||||||    
T  54140925 agagaaagtgctcaaaagagagtgttgctagcattcctc 54140887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 260
Target Start/End: Original strand, 27243089 - 27243231
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| | ||||||||| ||||||||||| |||||||||||| ||||||||||||||| |  | || || ||||  | |||| | ||| ||||    
T  27243089 ctcttttattggataaaatcaatgcatgtcccaccactttatgtgggttccatttccaaagtgtatgacccacattgatttaacccaatgagagagtgag 27243188  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    ||||| |||||||| ||||||||||||||||||| || |||||    
T  27243189 tattagaaagagtgttcaaaagagagtgttgctagcactcctc 27243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 119 - 262
Target Start/End: Complemental strand, 38928144 - 38928001
Alignment:
Q  119 tcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagt 218  Q
    ||||||| ||||| |||||||||||| |||| | | ||||| |||||| ||||||||||||||||||  ||| || ||||  | |||||||||| |||||    
T  38928144 tcttttattgggtaaaatcaatgtatatccctctactttatatgggttccatttccaaagtgtaggtcttacattgatttcacccaataaaagagtgagt 38928045  T
Q  219 attaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
     ||| | | |||| ||||||||||||||||||| ||||| ||||    
T  38928044 gttagagaaagtgatcaaaagagagtgttgctagcattcttctt 38928001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 260
Target Start/End: Complemental strand, 10769861 - 10769719
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| | ||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||| |||| || ||||     ||||||||| | ||    
T  10769861 ctcttttatttggtgaaatcaatgtatgtcccaccactttatatgggttccatttctaaagtgtaggtcctacattgatttcatcaaataaaagagtaag 10769762  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |  || | ||||||||||||||||||||||  || ||||||||    
T  10769761 tgctagagagagtgctcaaaagagagtgttattagcattcctc 10769719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 13809125 - 13809186
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagt 179  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  13809125 ctcttttattggataaaatcaatgtatgtcccaccattttatgtgggttccatttccaaagt 13809186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 46237182 - 46237110
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctac 190  Q
    |||||||| ||| ||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||| ||||    
T  46237182 ctcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttccatttctaaaatgtaggtcctac 46237110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 43657119 - 43657065
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggt 185  Q
    ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||    
T  43657119 tgaaatcaatgtatgtcccaccactttatgtgagttccatttccaaagtgtaggt 43657065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 26310590 - 26310517
Alignment:
Q  110 agcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||| |||||||| ||| ||||||||||||||||||||||||||| ||| ||||  |||| ||||||||||    
T  26310590 agcacttactcttttattggatgaaatcaatgtatgtcccaccattttttgttggttcaattttcaaagtgtag 26310517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 260
Target Start/End: Complemental strand, 29775238 - 29775136
Alignment:
Q  156 ttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacat 255  Q
    ||||||||||| |||||||||||||||||| |||| || ||||  | |||||||||| || |   || | |||||||||||||||||||||||||| |||    
T  29775238 ttatgtgggttccatttccaaagtgtaggtcctaccttgatttcacccaataaaagagtgtgc--tagagagagtgctcaaaagagagtgttgctagcat 29775141  T
Q  256 tcctc 260  Q
    |||||    
T  29775140 tcctc 29775136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 183
Target Start/End: Complemental strand, 18427317 - 18427221
Alignment:
Q  87 aatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||| |||||||||||  |||| | ||||  ||| |||| ||| ||||||||||||||||||||||||||| ||||||||  |||| ||||||||||    
T  18427317 aatgctagcaacactcatttttcaacactcactcatttattggatgaaatcaatgtatgtcccaccattttgtgtgggttctattttcaaagtgtag 18427221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 14236044 - 14236195
Alignment:
Q  97 acactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaat 196  Q
    |||||||||||  ||||||  || ||||| ||| |||||||||| |||||||||||| |||||| | |||  |||||||||||||| | || ||  ||||    
T  14236044 acactctcttt--agcactcactattttattggatgaaatcaatatatgtcccaccactttatgcgagttctatttccaaagtgta-gatccacaataat 14236140  T
Q  197 ttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    ||    |||||||| | ||||||||| |||||||| |||||| ||||||||||||    
T  14236141 ttagaccaataaaaaagtgagtattagaaagagtgttcaaaacagagtgttgcta 14236195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 357804 - 357869
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| || | |||||||||||||| | ||||| |||||||||||| ||||||||||||||||    
T  357804 ctcttttattgagggaaatcaatgtatgcctcaccactttatgtgggttccatttccaaagtgtag 357869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 20791321 - 20791405
Alignment:
Q  97 acactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||  ||||||  || ||||| ||| ||||||||||||||||||||||| |||||| | |||  |||||||||||||||    
T  20791321 acactctcttt--agcactcactattttattggatgaaatcaatgtatgtcccaccactttatgcgagttctatttccaaagtgtag 20791405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 21232655 - 21232604
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcattt 172  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||| |||||    
T  21232655 ttttattgggtgaaatcaatgtatgttccaccactttatgtgggttccattt 21232604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 24734749 - 24734891
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| ||||||||| ||||||||||||| ||| ||||||||  |||| ||||| |||||  | ||  | ||||    |||||| ||| ||||    
T  24734749 ctcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtagg-cccacaatgatttaaaccaataagagagtgag 24734847  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
    ||||| | |||||| ||||||||||||||||||| |||| ||||    
T  24734848 tattagagagagtgttcaaaagagagtgttgctagcattgctct 24734891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 38414708 - 38414813
Alignment:
Q  135 atcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctc 234  Q
    ||||||||||||||||||||||| ||||||||| ||||  |||||||| | || ||| ||||||    |||||| ||| ||||| ||||| ||| |||||    
T  38414708 atcaatgtatgtcccaccattttgtgtgggtttaatttttaaagtgta-gatccacgataatttaaaccaataagagagtgagtgttaaagagaatgctc 38414806  T
Q  235 aaaagag 241  Q
    |||||||    
T  38414807 aaaagag 38414813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 182
Target Start/End: Complemental strand, 50661664 - 50661594
Alignment:
Q  112 cacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    ||||| |||||||| | | | ||||||||| ||||||||||| |||||||||||| |||||||||| ||||    
T  50661664 cacttactcttttattagataaaatcaatgcatgtcccaccactttatgtgggttccatttccaaaatgta 50661594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 262
Target Start/End: Complemental strand, 41452031 - 41451888
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| ||||||||| ||||||||||||| ||| ||||||||  |||| ||||| ||||   | ||  | ||||    |||||| ||| ||||    
T  41452031 ctcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtagaccc-acaatgatttaaaccaataagagagtgag 41451933  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||| | |||||| ||||||||||||||||||| |||| |||||    
T  41451932 tattagagagagtgttcaaaagagagtgttgctagcattgctctt 41451888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 182
Target Start/End: Original strand, 7013567 - 7013618
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||||||| || |||||||||||||||| ||  |||||||||||||||||||    
T  7013567 tgaaatcattgaatgtcccaccattttacgtatgtttcatttccaaagtgta 7013618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 29588895 - 29588804
Alignment:
Q  92 tagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||||||| ||||| | ||| |||||||||| ||| | ||||||||||||||||   || |||||||| |||  |||| ||||||||||    
T  29588895 tagcaacactcacttttcaacacctgctcttttattggataaaatcaatgtatgtcctttcactttatgtgagttcaattttcaaagtgtag 29588804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 260
Target Start/End: Original strand, 10769874 - 10769908
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |||||||||||||||||||||||||| ||||||||    
T  10769874 agagtgctcaaaagagagtgttgctagcattcctc 10769908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 187
Target Start/End: Original strand, 3313968 - 3314074
Alignment:
Q  79 ataagggaaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaag 178  Q
    ||||| ||| |||||| ||||||||||||  |||| |  || ||||| | | ||||||||||| || || || |||||||||| |||| |||||| ||||    
T  3313968 ataagagaattgttagtaacactctcttt--agcattcactattttattagatgaaatcaatgcatttctcatcattttatgtaggttccatttcaaaag 3314065  T
Q  179 tgtaggttc 187  Q
    |||||||||    
T  3314066 tgtaggttc 3314074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 8825102 - 8824982
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagt 230  Q
    |||||||||| ||||||||||||||||||| |||||  |||| |||||| ||   || ||  ||||||    |||||| ||| ||||||||||| |||||    
T  8825102 tgaaatcaatatatgtcccaccattttatgcgggttcaattttcaaagtctacactc-acaataatttaaaccaataagagagtgagtattaaagagagt 8825004  T
Q  231 gctcaaaagagagtgttgctaa 252  Q
    | |||||| ||| |||||||||    
T  8825003 gttcaaaacagaatgttgctaa 8824982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 260
Target Start/End: Complemental strand, 27243099 - 27243042
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctc 260  Q
    |||||||||| ||||| ||| | |||||| ||||||||||||||||||| ||| ||||    
T  27243099 caataaaagagtgagtgttagagagagtgttcaaaagagagtgttgctagcatccctc 27243042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 36750980 - 36751045
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||| ||||||  |||||||| || |||||| |||| ||||||| ||||||||||| |||||||||    
T  36750980 ctctcttactgaatgaaatcagtgcatgtcctaccactttatgtaggtttcatttctaaagtgtag 36751045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 37600279 - 37600316
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctctta 263  Q
    ||||||||||||||||||||||| || |||||||||||    
T  37600279 agagtgctcaaaagagagtgttgttagcattcctctta 37600316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 37776839 - 37776774
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| | | |||||||||||||||||| |||| ||| ||||||||  |||| ||||||||||    
T  37776839 ctcttttattagatgaaatcaatgtatgtcctaccactttgtgtgggttcaattttcaaagtgtag 37776774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 55452151 - 55452086
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| || |||  ||||||||||||||| ||| ||||||||  |||||||||||||||    
T  55452151 ctcttttattggatggaatacatgtatgtcccaccactttgtgtgggttctatttccaaagtgtag 55452086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 42926253 - 42926205
Alignment:
Q  133 aaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgt 181  Q
    ||||||||||   |||||||||||||||||||  |||||||||||||||    
T  42926253 aaatcaatgtggatcccaccattttatgtgggactcatttccaaagtgt 42926205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 46237195 - 46237223
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaaca 254  Q
    |||||||||||||||||||||||||||||    
T  46237195 agagtgctcaaaagagagtgttgctaaca 46237223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 46575992 - 46576056
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||| ||| ||| ||||| ||||||||||||||||| ||| |||||||| ||||| |||| ||||    
T  46575992 ctctcttattggctgaaaccaatgtatgtcccaccactttttgtgggttccattttcaaaatgta 46576056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 51206061 - 51206220
Alignment:
Q  92 tagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacg 191  Q
    ||||||||||||||||| ||||||  ||| |||| | | |||||||||||||||||||| || |||||||| ||||||||| |||| ||||||| ||||     
T  51206061 tagcaacactctcttttgagcactcactcatttattagatgaaatcaatgtatgtcccatcactttatgtgagtttcattttcaaaatgtaggtcctaca 51206160  T
Q  192 ttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    || ||||  | |||||||||| |||||  || | ||||||||||||||||||||||||||    
T  51206161 ttgatttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgcta 51206220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 112 - 262
Target Start/End: Original strand, 39016701 - 39016851
Alignment:
Q  112 cacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaag 211  Q
    ||||| || ||||| ||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||||| || ||||| |  ||||||||    
T  39016701 cacttactattttattggatgaaatcaatgtatgtcccaccattttacgtgggttccatttccaaagtgtagtatctacattgattttacctaataaaag 39016800  T
Q  212 attgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    | | |||  || | |||||| |||||||||||||||||||||||| |||||    
T  39016801 agtaagtgctagagagagtgttcaaaagagagtgttgctaacatttctctt 39016851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 121 - 261
Target Start/End: Original strand, 44832510 - 44832650
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtat 220  Q
    ||||| |||||||||| |||||||||||||||||||||||||| || ||||||||||||| |||| |||| || ||||  | |||||||| | |||||      
T  44832510 ttttattgggtgaaattaatgtatgtcccaccattttatgtggattccatttccaaagtgcaggtcctacattgatttcacccaataaaaaaatgagtgc 44832609  T
Q  221 taaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
    |  | |||||||||||||||||||||||||| |||||||||    
T  44832610 tggagagagtgctcaaaagagagtgttgctagcattcctct 44832650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 129 - 260
Target Start/End: Original strand, 13069995 - 13070126
Alignment:
Q  129 ggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaaga 228  Q
    |||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||| |||| || ||||| |||||||||||| ||||| ||| | | |    
T  13069995 ggtgaaatcaatgtatgttccaccactttatgtgggttccattttcaaagtgtaggtcctacattgattttactcaataaaagagtgagtgttagagaaa 13070094  T
Q  229 gtgctcaaaagagagtgttgctaacattcctc 260  Q
     || ||||||||||||||||||| || |||||    
T  13070095 atgttcaaaagagagtgttgctagcactcctc 13070126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 127 - 262
Target Start/End: Original strand, 37315613 - 37315748
Alignment:
Q  127 tgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaa 226  Q
    ||||||||||||||||||||||||||| |||||||  ||||||||| ||||| ||||||||||| || ||||  | |||||||||| |||||  |||  |    
T  37315613 tgggtgaaatcaatgtatgtcccaccactttatgtaagtttcattttcaaagcgtaggttctacattgatttcacccaataaaagagtgagtgctaatga 37315712  T
Q  227 gagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||||||||| |||||||||||| ||||| ||||    
T  37315713 gagtgctcaaaaaagagtgttgctagcattcatctt 37315748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 264
Target Start/End: Complemental strand, 2187950 - 2187804
Alignment:
Q  117 gctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattga 216  Q
    ||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||| | || ||  |||  | |||||||| | |||    
T  2187950 gctcttttattgggtgaaatcaatgaatgtcccaccactttatgtggg-ttcattttcaaagtgtaggtcccacattgttttcacacaataaaaaaatga 2187852  T
Q  217 gtattaaaaagagtgctcaaaagagagtgttgctaacattcctcttaa 264  Q
    || ||| | |||||||||||||| ||||||||||| ||||| ||||||    
T  2187851 gtgttagagagagtgctcaaaagcgagtgttgctagcattcgtcttaa 2187804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 16178639 - 16178699
Alignment:
Q  130 gtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctac 190  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  16178639 gtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggttctac 16178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 251
Target Start/End: Original strand, 19447175 - 19447308
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||| ||| ||||||||| ||||||||||||||||| |||||||||||| ||||| |||| || |||  | ||  | ||||  |||||| | ||| ||||    
T  19447175 ctctcttattgggtgaaaccaatgtatgtcccaccactttatgtgggttccattttcaaaatgcaggaccgacaatgatttaactcaattagagagtgag 19447274  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    ||||||| |||||| |||||||||||||||||||    
T  19447275 tattaaagagagtgttcaaaagagagtgttgcta 19447308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 261
Target Start/End: Complemental strand, 42862554 - 42862414
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtat 220  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||      ||  || ||||  | |||||||||| |||||      
T  42862554 ttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccattttcaaagtgtgaaacataaattgatttcacccaataaaagagtgagtgc 42862455  T
Q  221 taaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
    || | | |||||||||||||||||||||||| |||||||||    
T  42862454 tagatatagtgctcaaaagagagtgttgctagcattcctct 42862414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 25719249 - 25719183
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtagg 184  Q
    |||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  25719249 ctctcttattggttgaaatcaatgtatgtcccaccactttatgtgggtttcatttccaaaatgtagg 25719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 2088789 - 2088736
Alignment:
Q  130 gtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||||||||||||||| ||||||||| || ||||||||||||||||    
T  2088789 gtgaaatcaatgtatgtcccaccactttatgtggattccatttccaaagtgtag 2088736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 40812081 - 40812162
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttt 199  Q
    |||||||| |||||||||||||| | | || |||||||| | ||||||||||||||||||||||||||  ||| ||||||||    
T  40812081 ctcttttattgggtgaaatcaatatttatcacaccatttaacgtgggtttcatttccaaagtgtaggtcatacattaatttt 40812162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 47237877 - 47237805
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctac 190  Q
    |||||||| ||| |||||||||| |||||||||||| ||||| |  ||||||||| |||||||||||||||||    
T  47237877 ctcttttattggatgaaatcaatatatgtcccaccactttatataagtttcattttcaaagtgtaggttctac 47237805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 43771170 - 43771317
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| ||||||||||||||||||||||| | | ||||||||  |||| ||||||||| |  | ||  | ||||    |||||| ||| ||||    
T  43771170 ctcttttattggatgaaatcaatgtatgtcccaccactctgtgtgggttcaattttcaaagtgta-gacccacaatgatttaaaccaataagagagtgag 43771268  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgctaacattcctcttaata 266  Q
    ||||||| || ||| ||||||||||| ||||||| |||| |||||||||    
T  43771269 tattaaagagggtgttcaaaagagagcgttgctagcattactcttaata 43771317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 24834625 - 24834687
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||| ||| || |||||||||||||||||||||||| ||||||||  |||| ||||||||||    
T  24834625 ttttattggatggaatcaatgtatgtcccaccattttgtgtgggttcaattttcaaagtgtag 24834687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 30867053 - 30867003
Alignment:
Q  133 aaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||| |||||||||||||||| |||||||||||| ||||| ||||||||||    
T  30867053 aaattaatgtatgtcccaccactttatgtgggttccattttcaaagtgtag 30867003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 21776981 - 21776917
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||||||| ||| | |||||||||||||||| |||| ||||||||| ||| ||||||||| ||||    
T  21776981 ctcttttattggataaaatcaatgtatgtcctaccactttatgtggattttatttccaaaatgta 21776917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 262
Target Start/End: Complemental strand, 38537566 - 38537506
Alignment:
Q  202 tcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||||||||| ||| ||||| | |||||| |||||||| ||||||||||||||| |||||    
T  38537566 tcaataaaagaatgattattagagagagtgttcaaaagaaagtgttgctaacattactctt 38537506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 190
Target Start/End: Complemental strand, 41278754 - 41278682
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctac 190  Q
    |||||||| ||||| |||| ||||||||||| |||| |||||||||||| ||||| |||| ||| ||| ||||    
T  41278754 ctcttttattgggtaaaattaatgtatgtcctaccactttatgtgggttccattttcaaaatgttggtcctac 41278682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 31251015 - 31250977
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatg 160  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  31251015 tttattggatgaaatcaatgtatgtcccaccattttatg 31250977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 262
Target Start/End: Original strand, 45081869 - 45081927
Alignment:
Q  204 aataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    ||||||||| | |||  |||||||| || |||||||||| |||||||||||||||||||    
T  45081869 aataaaagaataagtgctaaaaagaatgttcaaaagagaatgttgctaacattcctctt 45081927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 4138913 - 4138974
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||| ||| |||||||||||||||||||||||| || | ||| ||  |||||||||||||||    
T  4138913 tttattggatgaaatcaatgtatgtcccaccatattttatggattctatttccaaagtgtag 4138974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 8109000 - 8109033
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccac 151  Q
    |||||||| |||||||||||||||||||||||||    
T  8109000 ctcttttattgggtgaaatcaatgtatgtcccac 8109033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 20225477 - 20225412
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| || |||| ||| ||||||||||| ||| ||||||||  |||||||||||||||    
T  20225477 ctcttttattggatggaatccatgcatgtcccaccactttttgtgggttctatttccaaagtgtag 20225412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Complemental strand, 26361444 - 26361379
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| |||| |||||||||| ||||||||||| ||||||||  || | ||||||||||    
T  26361444 ctcttttattggatgaagtcaatgtatgacccaccattttgtgtgggttcaatattcaaagtgtag 26361379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 37315613 - 37315564
Alignment:
Q  207 aaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    |||||| ||||| ||| | |||||||||||||||||||||||||| ||||    
T  37315613 aaaagagtgagtgttagagagagtgctcaaaagagagtgttgctagcatt 37315564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 163
Target Start/End: Original strand, 43958211 - 43958240
Alignment:
Q  134 aatcaatgtatgtcccaccattttatgtgg 163  Q
    ||||||||||||||||||||||||||||||    
T  43958211 aatcaatgtatgtcccaccattttatgtgg 43958240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 50571900 - 50571973
Alignment:
Q  110 agcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||| |||||||| | | ||||||||||||||| |||| || ||||||||| ||  |||| ||||||||||    
T  50571900 agcacttactcttttattagatgaaatcaatgtatgccccatcaatttatgtggcttcaattttcaaagtgtag 50571973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 262
Target Start/End: Complemental strand, 7283222 - 7283154
Alignment:
Q  194 aatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||| || ||||||||| ||| ||||||| ||||| || |||||||||||||  ||||||| |||||    
T  7283222 aattttactaaataaaagaatgaatattaaagagagtactaaaaagagagtgtttataacatttctctt 7283154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 19933514 - 19933474
Alignment:
Q  217 gtattaaaaagagtgctcaaaagagagtgttgctaacattc 257  Q
    |||||||| |||||| |||||| ||||||||||||||||||    
T  19933514 gtattaaagagagtgttcaaaatagagtgttgctaacattc 19933474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 22542510 - 22542554
Alignment:
Q  204 aataaaagattgagtattaaaaagagtgctcaaaagagagtgttg 248  Q
    ||||| ||| |||||||||||||||||| |||||||| |||||||    
T  22542510 aataagagagtgagtattaaaaagagtgttcaaaagatagtgttg 22542554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 43124646 - 43124586
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    |||| ||| ||||||||||||||||||||||||||| ||| || || |||| |||| ||||    
T  43124646 tttaatggatgaaatcaatgtatgtcccaccattttgtgtaggctttattttcaaactgta 43124586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 52671877 - 52671917
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgt 161  Q
    ||||| ||| |||||| ||||||||||||||||||||||||    
T  52671877 ttttattggatgaaataaatgtatgtcccaccattttatgt 52671917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 251
Target Start/End: Complemental strand, 7599558 - 7599425
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgag 217  Q
    |||||||| ||| |||||||||||||| ||||| || |||||||||||| | |||||||||||||||| |||| || ||||| |||||||||| | ||||    
T  7599558 ctcttttattggatgaaatcaatgtatatcccagcactttatgtgggttccttttccaaagtgtaggtcctacattgattttactcaataaaaaagtgag 7599459  T
Q  218 tattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    | ||| ||||| ||||||||| ||||||||||||    
T  7599458 tgttagaaagaatgctcaaaaaagagtgttgcta 7599425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 33417737 - 33417826
Alignment:
Q  129 ggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagt 218  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||| |||||||  |||||||||||| |||||    
T  33417737 ggtgaaatcaatgcatgttccaccactttatgtgggtttcatttccaaagtgtaggtcctacattaatttcactcaataaaagagtgagt 33417826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 249
Target Start/End: Original strand, 1205853 - 1206002
Alignment:
Q  98 cactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatt 197  Q
    ||||||||||  ||||||  |||||||| | ||| |||| |||||||||| ||||| ||||| ||||||  |||||||||||||||||  ||| || |||    
T  1205853 cactctcttt--agcactcactcttttattaggtaaaattaatgtatgtctcaccactttatatgggttctatttccaaagtgtaggtcttacattgatt 1205950  T
Q  198 tttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgc 249  Q
    |  |||||||||||| |||||  |||| |||||| |||||| ||||||||||    
T  1205951 tcactcaataaaagagtgagtgctaaagagagtgttcaaaatagagtgttgc 1206002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 122 - 256
Target Start/End: Complemental strand, 28212018 - 28211885
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtatt 221  Q
    |||| |||||||||||||| |||||| |||||||||||||||||| |||||  ||||| ||||| |||| || ||||  | ||||||||   ||| | ||    
T  28212018 tttattgggtgaaatcaatatatgtctcaccattttatgtgggttccatttttaaagtataggtcctacattgatttcacccaataaaa-tgtgaatgtt 28211920  T
Q  222 aaaaagagtgctcaaaagagagtgttgctaacatt 256  Q
    | ||| | |||||||||||||||||||||||||||    
T  28211919 agaaataatgctcaaaagagagtgttgctaacatt 28211885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 179
Target Start/End: Original strand, 6387605 - 6387666
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagt 179  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  6387605 ctcttttattggataaaatcaatgtatgtcccaccattttatgtgggttccatttccaaagt 6387666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 260
Target Start/End: Complemental strand, 13407445 - 13407318
Alignment:
Q  133 aaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtattaaaaagagtgc 232  Q
    |||||||||||||||||||||||||| |||||||  |||| ||||||||| |  | || || ||||  | |||| | ||| ||||| ||| | ||||||     
T  13407445 aaatcaatgtatgtcccaccattttaagtgggttctattttcaaagtgtatgacccacattgatttaacccaatgagagaatgagtgttagagagagtgt 13407346  T
Q  233 tcaaaagagagtgttgctaacattcctc 260  Q
    ||||||||||||||||||| ||||||||    
T  13407345 tcaaaagagagtgttgctagcattcctc 13407318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 245
Target Start/End: Original strand, 35689527 - 35689651
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagtat 220  Q
    ||||| ||| ||||||||||||||||||||||| |||||||| ||| ||||| ||||||||| || | || ||  |||  | |||||||| | |||||      
T  35689527 ttttattggatgaaatcaatgtatgtcccaccactttatgtgagttccattttcaaagtgtaagtcccacattgttttcacccaataaaaaagtgagtgc 35689626  T
Q  221 taaaaagagtgctcaaaagagagtg 245  Q
    || | ||||||||||||||||||||    
T  35689627 tagagagagtgctcaaaagagagtg 35689651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 17499400 - 17499304
Alignment:
Q  85 gaaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||||||||||||||||| |  ||||||   ||||||| ||| |||||||||| |||||||||||||||| ||| ||||  |||| ||||||||||    
T  17499400 gaaatgttagcaacactctctct--agcactctatcttttattggatgaaatcaatatatgtcccaccattttgtgttggttcaattttcaaagtgtag 17499304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 17716898 - 17716960
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||| ||| |||||||||| |||||||||| ||||||||||||||| |||| ||||||||||    
T  17716898 ttttattggatgaaatcaatatatgtcccactattttatgtgggtttaattttcaaagtgtag 17716960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 183
Target Start/End: Original strand, 23685159 - 23685240
Alignment:
Q  102 ctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||| |||||||||  || ||||| ||| ||||||||||||||||||||||| |||||| | |||  |||||||||||||||    
T  23685159 ctctcttaagcactcactattttattggatgaaatcaatgtatgtcccaccactttatgcgagttctatttccaaagtgtag 23685240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 43026350 - 43026407
Alignment:
Q  133 aaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctac 190  Q
    ||||||||||||||||  ||| |||||||||||| |||||||||||||||||| ||||    
T  43026350 aaatcaatgtatgtcctgccactttatgtgggttccatttccaaagtgtaggtcctac 43026407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 11310490 - 11310438
Alignment:
Q  130 gtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgta 182  Q
    ||||||||||||||||||||||||| |||||||  |||||||| |||||||||    
T  11310490 gtgaaatcaatgtatgtcccaccatattatgtgaatttcattttcaaagtgta 11310438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 35151881 - 35151826
Alignment:
Q  102 ctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccatttt 157  Q
    ||||||| |||| || |||||||| ||| |||||||||||||||||||||||||||    
T  35151881 ctctttttagcatttactcttttattggatgaaatcaatgtatgtcccaccatttt 35151826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 1205880 - 1205833
Alignment:
Q  204 aataaaagattgagtattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    ||||||||| |||||  |||| ||||||||||||||||||||||||||    
T  1205880 aataaaagagtgagtgctaaagagagtgctcaaaagagagtgttgcta 1205833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 23142846 - 23142811
Alignment:
Q  226 agagtgctcaaaagagagtgttgctaacattcctct 261  Q
    |||||||||||||||||||||||||| |||||||||    
T  23142846 agagtgctcaaaagagagtgttgctagcattcctct 23142811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 16983522 - 16983580
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctct 261  Q
    |||||| ||| ||||||||| | |||||| ||||||||||||||||||| |||| ||||    
T  16983522 caataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcattactct 16983580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 183
Target Start/End: Complemental strand, 17741659 - 17741598
Alignment:
Q  122 tttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||| ||| ||||||||||||||||||||||||||| || | |||  |||| ||||||||||    
T  17741659 tttattggatgaaatcaatgtatgtcccaccattttgtgagagttcaattttcaaagtgtag 17741598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 32072141 - 32072206
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||| ||| |||||| |||||||||||||||| ||| ||||||||  ||||  |||||||||    
T  32072141 ctcttttattggatgaaatgaatgtatgtcccaccactttgtgtgggttcaatttttaaagtgtag 32072206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 34861323 - 34861262
Alignment:
Q  118 ctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagt 179  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||| ||||  |||| ||||||    
T  34861323 ctcttttattggatgaaatcaatgtatgtcccaccactttgtgtaggttcaattttcaaagt 34861262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 1977296 - 1977244
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    |||||||||||||||||| |||| ||| ||||||||  |||| ||||||||||    
T  1977296 tgaaatcaatgtatgtccaaccactttgtgtgggttcaattttcaaagtgtag 1977244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 5980007 - 5980055
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgcta 251  Q
    |||||| ||| ||||||||| | |||||| |||||||||||||||||||    
T  5980007 caataagagagtgagtattagagagagtgttcaaaagagagtgttgcta 5980055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 8903909 - 8903961
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||||||||||||||||||||| ||| ||| ||||  |||| ||||||||||    
T  8903909 tgaaatcaatgtatgtcccaccactttgtgtcggttcaattttcaaagtgtag 8903961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 259
Target Start/End: Complemental strand, 24184421 - 24184365
Alignment:
Q  203 caataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcct 259  Q
    |||||||||| || ||||||||||||||| | ||||||||||||   ||||||||||    
T  24184421 caataaaagagtgcgtattaaaaagagtgttgaaaagagagtgtcaataacattcct 24184365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 31691636 - 31691692
Alignment:
Q  202 tcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcc 258  Q
    ||||||||||| ||||| ||||| |||||  ||||||| ||||||||||| ||||||    
T  31691636 tcaataaaagagtgagtgttaaagagagttttcaaaagtgagtgttgctagcattcc 31691692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 36804959 - 36804927
Alignment:
Q  134 aatcaatgtatgtcccaccattttatgtgggtt 166  Q
    |||||||||||||||||||||||| ||||||||    
T  36804959 aatcaatgtatgtcccaccattttgtgtgggtt 36804927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 262
Target Start/End: Complemental strand, 31082 - 30905
Alignment:
Q  85 gaaatgttagcaacactctcttttaagcacttgctcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtagg 184  Q
    |||||| ||| |||| | |||||| ||||||  || ||||| | |||||||| || |||||||  |||| ||||| |||||| | ||| |||||||||||    
T  31082 gaaatgctagtaacattatcttttgagcactcacttttttattaggtgaaattaacgtatgtcataccactttatatgggttccgttttcaaagtgtagg 30983  T
Q  185 ttctacgttaatttttctcaataaaagattgagtattaaaaagagtgctcaaaagagagtgttgctaacattcctctt 262  Q
    |||||| || || |  | |||||||| | ||| |  || ||||||| |||||||||||||||||||| | ||||||||    
T  30982 ttctacattgatgtcacccaataaaaaagtgaatgctagaaagagtactcaaaagagagtgttgctagccttcctctt 30905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0099 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0099
Description:

Target: scaffold0099; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 27358 - 27420
Alignment:
Q  119 tcttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgt 181  Q
    ||||||| |||||||||||||| |||||||||||| ||||||| |||| ||||| ||||||||    
T  27358 tcttttattgggtgaaatcaatatatgtcccaccactttatgtaggttccattttcaaagtgt 27420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 251
Target Start/End: Original strand, 27858 - 27988
Alignment:
Q  120 cttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtaggttctacgttaatttttctcaataaaagattgagta 219  Q
    |||||| ||| || |||||||||||||||||||| ||| ||||||||  |||||||||||||||   | ||  | ||||    |||||| ||| ||||||    
T  27858 cttttattggatggaatcaatgtatgtcccaccactttgtgtgggttctatttccaaagtgtagaccc-acaatgatttaaaccaataagagagtgagta 27956  T
Q  220 ttaaaaagagtgctcaaaagagagtgttgcta 251  Q
    ||||| |||||| ||||||||| |||||||||    
T  27957 ttaaagagagtgttcaaaagagggtgttgcta 27988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 184
Target Start/End: Original strand, 35651 - 35704
Alignment:
Q  131 tgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtagg 184  Q
    |||||||||||||||||||| ||||||||||||||| ||||  |||| ||||||    
T  35651 tgaaatcaatgtatgtcccatcattttatgtgggttccattctcaaaatgtagg 35704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 9711 - 9773
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||| ||| |||||||||||||| |||||||||||| ||||||||  ||||  |||||||||    
T  9711 ttttattggatgaaatcaatgtatatcccaccattttgtgtgggttcaattttaaaagtgtag 9773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 11257 - 11319
Alignment:
Q  121 ttttactgggtgaaatcaatgtatgtcccaccattttatgtgggtttcatttccaaagtgtag 183  Q
    ||||| ||| |||||||||||||| |||||||||||| ||||||||  ||||  |||||||||    
T  11257 ttttattggatgaaatcaatgtatatcccaccattttgtgtgggttcaattttaaaagtgtag 11319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University