View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_40 (Length: 279)
Name: NF8143_low_40
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 29240848 - 29240593
Alignment:
| Q |
1 |
atctaatgttccactttgcaaatcaagcaaaaaatcctttactagttgtcgagcactttcattcgcctaaaagatatgaagaaataaaaattagaatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240848 |
atctaatgttccactttgcaaatcaagcaaaaaatcctttaccagctgtcgagcactttcattcgcctaaaagatatgaagaaataaaaattagaatcca |
29240749 |
T |
|
| Q |
101 |
cctatctatctatctagtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaattg |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240748 |
cctatcta----tctagtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaattg |
29240653 |
T |
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| Q |
201 |
aaatnnnnnnnngtaataattacctttcaatgactgtaagcaaatttgttggatgatattt |
261 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29240652 |
aaat-aaaaaaagtaataattacctttcaatgactgtaagcaaatttgttggatgatattt |
29240593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 16828391 - 16828129
Alignment:
| Q |
1 |
atctaatgttccactttgcaaatcaagcaaaaaatcctttactagttgtcgagcactttcattcg-cctaaaagatatgaagaaataaaaattagaatcc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
16828391 |
atctaatgttccactttgcaaatcaagcaaaaaatcctttgccagctgtcgagcactttcattcctcctaaaatatatgaagaaataaaaattagaatcc |
16828292 |
T |
|
| Q |
100 |
acctatctatctatctagtaagaacccctcacaaaaataaaaatgatctattaagattagcaggacaatacgttatgcttttcaatagaactctaaaatt |
199 |
Q |
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| T |
16828291 |
acctatttatcga----gtaagcaccccccataaaaataaaaatgatccattaagattaacaggacaacacgttatgtttttcaatagaactgtaaaatt |
16828196 |
T |
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| Q |
200 |
g-----aaatnnnnnnnngtaataattacctttcaatgactgtaagcaaatttgttggatgatattt |
261 |
Q |
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| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16828195 |
gatataaaaaaaataataataagaattacctttcaatgactgtaagcaaatttgttggatgatattt |
16828129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 846161 - 846199
Alignment:
| Q |
2 |
tctaatgttccactttgcaaatcaagcaaaaaatccttt |
40 |
Q |
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|||| ||||||||||||||||||||||||||| |||||| |
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| T |
846161 |
tctagtgttccactttgcaaatcaagcaaaaactccttt |
846199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 846375 - 846411
Alignment:
| Q |
222 |
acctttcaatgactgtaagcaaatttgttggatgata |
258 |
Q |
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| T |
846375 |
acctttcaattactgtaagtaaatttgttggatgata |
846411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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