View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_41 (Length: 277)
Name: NF8143_low_41
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_41 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 41813084 - 41812815
Alignment:
| Q |
8 |
ccgcacacacgtcaggctttgacttggaaatgatcgattacatcaactctttgagaaatgggatattagaggcatattctgggatcttccaagggtttaa |
107 |
Q |
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| T |
41813084 |
ccgcccacacgtcaggctttgacttggaaatgattgattacatcaactctttgagaaatgggatattagaggcatattctgggatcttccaagggtttaa |
41812985 |
T |
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| Q |
108 |
gaattcatctaaaactcagctcttgattccttatgcaccccacatcctgcagttcttggatagcatatacatggaaaaagacatgtgagaaagcaaaaga |
207 |
Q |
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| T |
41812984 |
gaattcatctaaaactcagctcttgattccttatgcaccccacatcctgcagttcttggatagcatatacatggaaaaagacatgtgagaaagcaaaaga |
41812885 |
T |
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| Q |
208 |
gttaattttccaatttattttttctttgttatatattaattgttttagtgacttcattgacttttcttac |
277 |
Q |
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| T |
41812884 |
gttaattttccaatttattttttctttgttatatattaattgttttagtgacttcattgacttttcttac |
41812815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 41830657 - 41830391
Alignment:
| Q |
13 |
cacacgtcaggctttgacttggaaatgatcgattacatcaactctttgagaaatgggatattagaggcatattctgggatcttccaagggtttaagaatt |
112 |
Q |
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| T |
41830657 |
cacacatcaggctttgacttggaaatgacagagtacattaactctttgagaaatgggatattagaggcatattctgggatcttccaagggtttaagaatt |
41830558 |
T |
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| Q |
113 |
catctaaaactcagctcttgattccttatgcaccccacatcctgcagttcttggatagcatatacatggaaaaagacatgtgagaaagcaaaagagttaa |
212 |
Q |
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| T |
41830557 |
catcaaaatcccagatcttgattccttatgctccccacatcctccagttcttggatagcatatacatggaaaaagacatgtgagaaagcaaaatagttca |
41830458 |
T |
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| Q |
213 |
ttttccaatttattttttctttg---ttatatattaattgttttagtgacttcattgacttttcttac |
277 |
Q |
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| T |
41830457 |
ttttccaatttat-ttttcatagcaataatatattcattcttttagtgacttcgttgacttttcttac |
41830391 |
T |
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