View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8143_low_45 (Length: 256)
Name: NF8143_low_45
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_45 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0136 (2 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 5254693 - 5254448
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
5254693 |
tagtgctattttctctatttatttggtaatataaacaacgatccccatatgttttt----ttgtttttgttaactatgtttttctaaagaaacttttgct |
5254598 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaag-agaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcca |
199 |
Q |
| |
|
||||| |||||||||| |||||||||||||| | ||||| |||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
5254597 |
aaaaaaatttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtctttggt-----aactaactctgtctacatatgtgcca |
5254503 |
T |
|
| Q |
200 |
ctttatgccaaactaatcatctctcaactctctctatattagatcttttaacatgat |
256 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5254502 |
ctttatgccaaactaataatctctcaa--ctctctatattagatcttttaacatgat |
5254448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 6648074 - 6647846
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6648074 |
tagtgctattttctctatttatttggcaatataaacaccgatccccata----ttttttttagtttttgttaactatgtttttctaaacaaacttttgct |
6647979 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaag-agaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcca |
199 |
Q |
| |
|
||||| |||||||||| |||||||||||||| | |||| |||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
6647978 |
aaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacatcatctaacgtttgtctttggt-----aactaactctgtctacatatgtgcca |
6647884 |
T |
|
| Q |
200 |
ctttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
6647883 |
ctttatgccaaactaatcatctttcaactctctatata |
6647846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 124; Significance: 7e-64; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 20133789 - 20134016
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20133789 |
tagtgctattttctctatttatttggaaatataatcaccgatccccatatgttttt----ttgtttttgttaactatgtttttctaaacaaacttttgct |
20133884 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaagagaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgccac |
200 |
Q |
| |
|
||||| |||||||||| ||||||||||||| | ||||| |||||||||||||||||| || |||||||||||||||||| |||||||| |
|
|
| T |
20133885 |
aaaaaaatttctcattaaatttgtgccaccaaagaaaaaaaaaacctcatctaacgtttgtctttggt-----aactaactctgtctacatctgtgccac |
20133979 |
T |
|
| Q |
201 |
tttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
20133980 |
tttatgccaaactaatcatttctcaactctctatata |
20134016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 24523724 - 24523860
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24523724 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatgtttt--tttttgtttttgttaactatgtttttctaaacaaacttttgct |
24523821 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaag |
139 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |
|
|
| T |
24523822 |
aaaaaagattctcattaaatttgtgccaccaaagaaaag |
24523860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 24523869 - 24523932
Alignment:
| Q |
174 |
aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
24523869 |
aactaactctgtctacatatgtgccattttatgtcaaactaatcatctcttaactctctatata |
24523932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20142166 - 20142209
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccc |
45 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
20142166 |
tagtgctatttt-tctatttatttggcaatataaacacggatccc |
20142209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 11144108 - 11144338
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatat-atttttgtttttgtttatgttaactatgtttttctaaacaaacttttgc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11144108 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatgttttttttttttgtttttgttaactatgtttttctaaacaaacttttgc |
11144207 |
T |
|
| Q |
100 |
--tnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-agaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtg |
196 |
Q |
| |
|
||||| |||||||| |||||| ||||||||| | ||| | |||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
11144208 |
aaaaaaaaaaattctcattaaatttataccactaaagaaaagaaaaaatctcatctaacgtttgtctttggt-----aactaactctgtctacatatgtg |
11144302 |
T |
|
| Q |
197 |
ccactttatgccaaactaatcatctctcaactctct |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11144303 |
ccactttatgccaaactaatcatctctcaactctct |
11144338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 4469631 - 4469858
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4469631 |
tagtgctattttctctatttatttggcaatataaacaccgaaccccatatgatttt----ttgtttttgttaactatgtttttctaaacaaacttttgct |
4469726 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaag-agaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcca |
199 |
Q |
| |
|
||||| |||||||||| |||||||||||||| | ||||| |||||||||||||||||| || |||||||| ||||||||||||||||| |
|
|
| T |
4469727 |
aaaaaaa-ttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtctttggt-----aactaactatgtctacatatgtgcca |
4469820 |
T |
|
| Q |
200 |
ctttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4469821 |
ctttatgccaaactaatcatctctcaactctctatata |
4469858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 38690953 - 38691179
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| | |
|
|
| T |
38690953 |
tagtgttattttctctatttatttggcaatataaccaccgat-cccatatgttt---tttttgtttttgttaactatgtttttctaaacaaacttttgtt |
38691048 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaagagaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgccac |
200 |
Q |
| |
|
||||| |||||||||| ||| ||||||||| | ||| | |||||||||||||||||| || || ||||||||||||||| |||| ||| |
|
|
| T |
38691049 |
gaaaaaaattctcattaaatttgtgccaacaaagaaaa-aaaaaactcatctaacgtttgtctttggt-----aattaactctgtctacatctgtgtcac |
38691142 |
T |
|
| Q |
201 |
tttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
38691143 |
tttatgtcaaacaaatcatctctcaactctctatata |
38691179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 39669652 - 39669515
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
39669652 |
tagtgctattttttctatttatttggcaatataaacaccgatccccatatgatttt-tttttgtttttgttaactatgtttttctaaacaaacttttgct |
39669554 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaag |
139 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |
|
|
| T |
39669553 |
aaaaaaaattctcattaaatttgtgccaccaaagaaaag |
39669515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 39669506 - 39669443
Alignment:
| Q |
174 |
aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| |||| |
|
|
| T |
39669506 |
aactaactctgtctacatatgtgccactttatgtcaaactaatcatctttcaaatctctatata |
39669443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 4468349 - 4468399
Alignment:
| Q |
6 |
ctattttctctatttatttggcaatataaacaccgatccccatatattttt |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||| ||||| |
|
|
| T |
4468349 |
ctattttctctatttatttggcaatataaacatcaatccccatattttttt |
4468399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 4468526 - 4468577
Alignment:
| Q |
181 |
tctgtctacatatgtgccactttatgccaaactaatcatctctcaactctct |
232 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
4468526 |
tctgtctacatttgtgccactttatgccaaagtaatcctctctcaaatctct |
4468577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13859803 - 13859575
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||| |||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
13859803 |
tagtgctattttctatatttatttggcaatataaacactgatccccata----ttttttttagtttttgttaactatgtttttgtaaacaaacttttgct |
13859708 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaag-agaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcca |
199 |
Q |
| |
|
||||| |||||||||| |||||||||||||| | ||||| ||| |||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
13859707 |
aaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatataacgtttgtctttgat-----aactaactctgtctatatatgtgcca |
13859613 |
T |
|
| Q |
200 |
ctttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13859612 |
ctttatgccaaactaatcatctctcaactctctatata |
13859575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7551579 - 7551350
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgc- |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7551579 |
tagtgttattttctctatttatttggcaatataaccaccgatccccatatgttt---tttttgtttttgttaactatgtttttctaaacaaacttttgcc |
7551483 |
T |
|
| Q |
100 |
-tnnnnnnnnttctctttaaatttgtaccaccaaagaaaagagaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcc |
198 |
Q |
| |
|
||||| |||||||||| ||| ||||||||| | ||| |||||||||||||||||| || |||||||||||||||||| |||| | |
|
|
| T |
7551482 |
aaaaaaaaaattctcattaaatttgtgccaacaaagaaaa-aaaaatatcatctaacgtttgtctttggt-----aactaactctgtctacatctgtgtc |
7551389 |
T |
|
| Q |
199 |
actttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| |||| |
|
|
| T |
7551388 |
actttatgtcaaacaaatcatctctcaactctctatata |
7551350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 3993331 - 3993426
Alignment:
| Q |
5 |
gctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3993331 |
gctattttctctatttatttagcaatataaacaccgatccccatatgttttttgttttgtttttgttaactatgtttttctaaacaaacttttgct |
3993426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 40746 - 40879
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
40746 |
tagtgctattttctctatttatttggcaatataaacaccgatcctcatattttatttttttt-----tgttaactatgtttttctaaacaaacttttgct |
40840 |
T |
|
| Q |
101 |
nnnnnnnnttctctttaaatttgtaccaccaaagaaaag |
139 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |
|
|
| T |
40841 |
aaaaaaaattctcattaaatttgtgccaccaaagaaaag |
40879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 40888 - 40951
Alignment:
| Q |
174 |
aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata |
237 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
40888 |
aactaactttgtctacatatgtgccactttatgtcaaactaatcatctctcaactctctatata |
40951 |
T |
|
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Target: scaffold0416 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4370 - 4425
Alignment:
| Q |
1 |
tagtgctattttctctatttatttggcaatataaacaccgatccccatatattttt |
56 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
4370 |
tagtgttattttctctatttatttggcaatataaccaccgatccccatatgttttt |
4425 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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