View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_46 (Length: 252)
Name: NF8143_low_46
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_46 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 47 - 252
Target Start/End: Original strand, 4482432 - 4482637
Alignment:
| Q |
47 |
acagggttgcatgttctgcataatcttatttagcatcaaaatgacaaagaagtttgagattgatactcactatgagcaaagaagagagaagagaaggtaa |
146 |
Q |
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| T |
4482432 |
acagggttgcatgttctgcataatcttatttagcatgaaaatgacaaagaagtatgagattgatactcactatgagcaaagaagagagaagagaaggtaa |
4482531 |
T |
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| Q |
147 |
accaaagagctgtcctgagctggagcttccagtttccatgaaactctgggttgggtactctctctagataccaaacaacaagcattgtgtaaatcaagat |
246 |
Q |
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| T |
4482532 |
accaaagagctgtgctgagctggagcttccagtttccatgaaactctgggttgggtactctctctagataccaaacaacacacattgtgtaaatcaagat |
4482631 |
T |
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| Q |
247 |
tgcacc |
252 |
Q |
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|||||| |
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| T |
4482632 |
tgcacc |
4482637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 4487487 - 4487616
Alignment:
| Q |
105 |
attgatactcactatgagcaaagaagagagaagagaaggtaaaccaaagagctgtcctgagctggagcttccagtttccatgaaactctgggttgggtac |
204 |
Q |
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| T |
4487487 |
attgatactcactatgagcgaagaacaaagaggagaaggtaaaccaaagagctgtactgagctg------------------aaactctgggttcggttc |
4487568 |
T |
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| Q |
205 |
tctctctagataccaaacaacaagcattgtgtaaatcaagattgcacc |
252 |
Q |
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| T |
4487569 |
tctctcgagataccaaacaactaacattgtgtaaatcaagattgcacc |
4487616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 4482369 - 4482401
Alignment:
| Q |
13 |
gagatgaaaactaagacattacttgttaattaa |
45 |
Q |
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| T |
4482369 |
gagatgaaaactaagacattacttgttaattaa |
4482401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 34606681 - 34606629
Alignment:
| Q |
95 |
gaagtttgagattgatactcactatgagcaaagaagagagaagagaaggtaaa |
147 |
Q |
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| T |
34606681 |
gaagtatgagatggatactcactatgagcaaagaatagcgaggagaaagtaaa |
34606629 |
T |
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