View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_5 (Length: 560)
Name: NF8143_low_5
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 151 - 395
Target Start/End: Original strand, 19583826 - 19584070
Alignment:
| Q |
151 |
gaggtacctgccaagaaccgcagtgagggttcggatgtgataagactcaggctcctcttccagtggcttctcggtgtagatgatgtgaacagcaggagcg |
250 |
Q |
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| T |
19583826 |
gaggtacctgccaagaaccgcagtgagggttcggatgtgataagactcaggctcctcttccagtggcttctcggtgtagatgatgtgaacagcaggagcg |
19583925 |
T |
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| Q |
251 |
gaagaagatgaagaatcggaatcgatgggtttgggtgttgaatcagacatggcgatggcgatgataatcaaaggaagaagtgcgaagatgacaaagaacg |
350 |
Q |
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| T |
19583926 |
gaagaagatgaagaatcggaatcgatgggtttgggtgttgaatcagacatggcgatggcgatgataatcaaaggaagaagtgcgaagatgacaaagaacg |
19584025 |
T |
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| Q |
351 |
agaatggtctcaacgacgaaatgttcatgtctgattttgtcttcg |
395 |
Q |
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| T |
19584026 |
agaatggtctcaacgacgaaatgttcatgtctgattttgtcttcg |
19584070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 19583673 - 19583759
Alignment:
| Q |
1 |
aacaaacacaaacacaaacacttttgatctaaaataaaaacaagaattcatacatatgtttttgcatgcaagtgagttataataagt |
87 |
Q |
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| T |
19583673 |
aacaaacacaaacacaaacacttttgatctaaaataaaaacatgaattcatacatatgtttttgcatgcaagtgagttataataagt |
19583759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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