View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_52 (Length: 247)
Name: NF8143_low_52
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_52 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 42780413 - 42780643
Alignment:
| Q |
17 |
acatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacactggtcaatccagctagttttgagcgaaaatcgttgaatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42780413 |
acatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacaccggtcaatccagctagttttgagcgaaaatcgttgaatt |
42780512 |
T |
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| Q |
117 |
ctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctcaccttgcaagtactc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42780513 |
ctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctcaccttgcaagtactc |
42780612 |
T |
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| Q |
217 |
aaagaactgctttttagcatgctcatgctct |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
42780613 |
aaagaactgctttttagcatgctcatgctct |
42780643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 29539429 - 29539200
Alignment:
| Q |
17 |
acatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacactggtcaatccagctagttttgagcgaaaatcgttgaatt |
116 |
Q |
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||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29539429 |
acatcacttaaaccattctctaatgccctaaccaaattctcgaagaagtttttagtcacacgggtcaatccagctagttttgagcgaaaatcgttgaatt |
29539330 |
T |
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| Q |
117 |
ctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctcaccttgcaagtactc |
216 |
Q |
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| T |
29539329 |
ctttagaggggccttcagcactgaggaatacttggagttccttttcggcacatagatgaagtctctccaagcctgattctgcctcaccttgcaagtactc |
29539230 |
T |
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| Q |
217 |
aaagaactgctttttagcatgctcatgctc |
246 |
Q |
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| T |
29539229 |
aaagagcttctttttagcaagctcatgctc |
29539200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 29554274 - 29554045
Alignment:
| Q |
17 |
acatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacactggtcaatccagctagttttgagcgaaaatcgttgaatt |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| |
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| T |
29554274 |
acatcacataaaccattctctaatgccctaaccaaattctcaaagaagtttttagtcacactggtcaatccagccagttttctgcgaaaattgttgaatc |
29554175 |
T |
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| Q |
117 |
ctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctccaaacttgattctgcctcaccttgcaagtactc |
216 |
Q |
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||| ||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
29554174 |
cttcagacggggcttcagcactgaggaatgcttggagttccttttcggcgcattgatgaagtctctccaaacctgattctgccacaccttgcaagtactc |
29554075 |
T |
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| Q |
217 |
aaagaactgctttttagcatgctcatgctc |
246 |
Q |
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||||| |||||||||||||||||||||||| |
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| T |
29554074 |
aaagagctgctttttagcatgctcatgctc |
29554045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 201
Target Start/End: Complemental strand, 42194211 - 42194087
Alignment:
| Q |
77 |
ctggtcaatccagctagttttgagcgaaaatcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaa |
176 |
Q |
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|||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42194211 |
ctggtcaatccagctagtttggtgcgaaaatcgttgaattctttagacgggccttcagcactgaggaatacttggagttccttttcggcgcattgatgaa |
42194112 |
T |
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| Q |
177 |
gtctctccaaacttgattctgcctc |
201 |
Q |
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| T |
42194111 |
gtctctccaaacctgattctgcctc |
42194087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 42194721 - 42194659
Alignment:
| Q |
17 |
acatcacataaaccattctctaatgcactaaccaaattcttgaagaagtttttagtcacactg |
79 |
Q |
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| T |
42194721 |
acatcacataaaccattctctaatgccctgaccaaattctcgaagaagtttttagtcacactg |
42194659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 202 - 246
Target Start/End: Complemental strand, 42193985 - 42193941
Alignment:
| Q |
202 |
accttgcaagtactcaaagaactgctttttagcatgctcatgctc |
246 |
Q |
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| T |
42193985 |
accttgcaagtactcaaagaactgctttttagcatgctcatgctc |
42193941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 25212027 - 25211907
Alignment:
| Q |
85 |
tccagctagttttgagcgaaaatcgttgaattctttagacgggtcttcagtactgaggaatacttggagttccttttccgcgcattgatgaagtctctcc |
184 |
Q |
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|||||||| ||||| || || ||||||||||||||||| || |||||| | |||||||| || ||||| ||||| || ||||||||||||||||| |
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| T |
25212027 |
tccagctaattttgtacggaagtcgttgaattctttagattggccttcagcagtgaggaattgctgtagttctttttcagcacattgatgaagtctctct |
25211928 |
T |
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| Q |
185 |
aaacttgattctgcctcacct |
205 |
Q |
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| T |
25211927 |
agaccagattctgcttcacct |
25211907 |
T |
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