View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_55 (Length: 244)
Name: NF8143_low_55
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 1482902 - 1483143
Alignment:
| Q |
1 |
cctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattaattgataatttttatttgagag |
100 |
Q |
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| T |
1482902 |
cctgtttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattacttgataatttttatttgagag |
1483001 |
T |
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| Q |
101 |
gaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggattt |
200 |
Q |
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| T |
1483002 |
gaagcgtggaaagaaagtgtaggtgtatgcatggtcagctaatggttttagggagttgctgggtaaaatgtgcattgaaccaaattagtgtgtaggattt |
1483101 |
T |
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| Q |
201 |
aa-------gggtttctgggagttgctaggcatgatgtccat |
235 |
Q |
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| T |
1483102 |
aaggattaggggtttctgggagttgctaggcatgatgtccat |
1483143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 204
Target Start/End: Original strand, 36717639 - 36717859
Alignment:
| Q |
5 |
tttcttttctcttaatcaaattgtttggaattcaccatgactctttgtttgatataatatattcttctatattaattgataatttttattt--------- |
95 |
Q |
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| T |
36717639 |
tttcttttctcttaatcaaattgtttggaattcaccatgattctttgtttgataagatatatggttctctattacttgattgtttttttttttttttttt |
36717738 |
T |
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| Q |
96 |
----------gagaggaagcgtggaaagaaagtgtag--gtgtatgcatggtcagctaatggtttttgggagttgctgggtaaaatgtgcattgaaccaa |
183 |
Q |
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| T |
36717739 |
ttctctttctgagaggaagcgtggaaggaaagtgtagctgtgtatgcatggttgggtaagggtttttgggagttgctgggcaaaatgtgtattgaatcaa |
36717838 |
T |
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| Q |
184 |
attagtgtgtaggatttaagg |
204 |
Q |
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| T |
36717839 |
accaatgtgtaggatttaagg |
36717859 |
T |
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