View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8143_low_60 (Length: 238)

Name: NF8143_low_60
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8143_low_60
NF8143_low_60
[»] chr3 (12 HSPs)
chr3 (75-152)||(22893891-22893968)
chr3 (75-150)||(11512479-11512554)
chr3 (109-152)||(20286994-20287037)
chr3 (109-152)||(31342097-31342140)
chr3 (84-140)||(29081598-29081655)
chr3 (82-119)||(49159502-49159539)
chr3 (75-119)||(25790897-25790941)
chr3 (82-132)||(48342214-48342264)
chr3 (183-217)||(11512411-11512445)
chr3 (73-133)||(20286892-20286953)
chr3 (183-220)||(20286925-20286962)
chr3 (185-217)||(31342031-31342063)
[»] chr1 (18 HSPs)
chr1 (75-151)||(28045410-28045486)
chr1 (75-152)||(50754814-50754891)
chr1 (73-152)||(9379908-9379987)
chr1 (75-148)||(28739304-28739377)
chr1 (75-152)||(9884931-9885008)
chr1 (75-147)||(44381908-44381981)
chr1 (73-142)||(35251163-35251234)
chr1 (75-152)||(15928073-15928141)
chr1 (79-142)||(49200058-49200122)
chr1 (74-152)||(6539545-6539627)
chr1 (75-111)||(10449447-10449483)
chr1 (183-217)||(28739413-28739447)
chr1 (74-131)||(47557372-47557430)
chr1 (183-217)||(50754748-50754782)
chr1 (82-119)||(6539683-6539720)
chr1 (183-220)||(9379839-9379876)
chr1 (183-220)||(9884862-9884899)
chr1 (82-141)||(44938895-44938955)
[»] chr7 (5 HSPs)
chr7 (77-152)||(17272789-17272864)
chr7 (74-138)||(43500085-43500149)
chr7 (75-152)||(29681854-29681940)
chr7 (183-217)||(7211884-7211918)
chr7 (183-217)||(17272723-17272757)
[»] chr5 (17 HSPs)
chr5 (73-152)||(5215558-5215637)
chr5 (4-75)||(42935445-42935516)
chr5 (75-152)||(36568794-36568871)
chr5 (91-152)||(19417535-19417595)
chr5 (104-152)||(29385305-29385353)
chr5 (82-133)||(29385394-29385446)
chr5 (72-141)||(7137628-7137698)
chr5 (84-148)||(9904168-9904233)
chr5 (82-119)||(19417442-19417479)
chr5 (183-220)||(29385385-29385422)
chr5 (184-220)||(19417466-19417502)
chr5 (104-151)||(9177865-9177912)
chr5 (108-151)||(25879333-25879376)
chr5 (84-133)||(1839970-1840020)
chr5 (75-148)||(4376340-4376414)
chr5 (183-220)||(1839992-1840029)
chr5 (82-138)||(4376447-4376504)
[»] chr2 (10 HSPs)
chr2 (73-152)||(12918623-12918702)
chr2 (73-152)||(39819153-39819232)
chr2 (74-152)||(15562294-15562372)
chr2 (82-133)||(39819060-39819112)
chr2 (109-152)||(7755426-7755469)
chr2 (73-119)||(12918496-12918543)
chr2 (183-220)||(12918554-12918591)
chr2 (183-220)||(39819084-39819121)
chr2 (87-133)||(12918535-12918582)
chr2 (82-143)||(5913522-5913583)
[»] chr6 (7 HSPs)
chr6 (75-152)||(2543735-2543812)
chr6 (74-152)||(11448147-11448225)
chr6 (74-113)||(16193850-16193889)
chr6 (183-217)||(2543843-2543877)
chr6 (75-112)||(28581731-28581768)
chr6 (75-111)||(369542-369578)
chr6 (75-119)||(5150619-5150663)
[»] chr4 (13 HSPs)
chr4 (73-152)||(31846780-31846859)
chr4 (73-152)||(31012217-31012296)
chr4 (91-152)||(6608439-6608500)
chr4 (76-152)||(2254622-2254698)
chr4 (109-152)||(6607420-6607463)
chr4 (77-143)||(32008335-32008402)
chr4 (82-148)||(46321429-46321496)
chr4 (82-133)||(31846900-31846952)
chr4 (82-133)||(54613030-54613082)
chr4 (77-131)||(15031965-15032020)
chr4 (87-141)||(44023038-44023092)
chr4 (183-220)||(31846891-31846928)
chr4 (82-133)||(31012124-31012176)
[»] chr8 (5 HSPs)
chr8 (75-152)||(43465176-43465256)
chr8 (72-119)||(1605038-1605085)
chr8 (75-147)||(16687512-16687585)
chr8 (75-147)||(31470839-31470913)
chr8 (79-147)||(32857067-32857136)
[»] scaffold0343 (2 HSPs)
scaffold0343 (75-119)||(12226-12270)
scaffold0343 (82-144)||(12305-12365)
[»] scaffold0001 (1 HSPs)
scaffold0001 (89-141)||(507720-507773)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 22893891 - 22893968
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22893891 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaac 22893968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 75 - 150
Target Start/End: Complemental strand, 11512554 - 11512479
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaaca 150  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  11512554 ggataatacttgggtgacattatggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaaca 11512479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 20287037 - 20286994
Alignment:
Q  109 ttggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  20287037 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 20286994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 31342140 - 31342097
Alignment:
Q  109 ttggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  31342140 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 31342097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 29081598 - 29081655
Alignment:
Q  84 ttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagt 140  Q
    ||||||||||||||||||| |||||| ||||||||| |||||||||||||| ||||||    
T  29081598 ttgggtgacattgtggttggtgacatcggtgacattgaccaaccacaatgtcacaagt 29081655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 49159539 - 49159502
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt 119  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  49159539 acttgggtgacattgtggttggtgacattggtgacatt 49159502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Complemental strand, 25790941 - 25790897
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacatt 119  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||    
T  25790941 ggataatatttgggtgacattatggttggtgacattggtgacatt 25790897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 48342214 - 48342264
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatta-ccaaccacaatg 132  Q
    ||||||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  48342214 acttgggtgacattgtggttggtgacatt-gtgacattagccaaccacaatg 48342264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 11512445 - 11512411
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaa 217  Q
    |||||||||||||||| ||||||||||||||||||    
T  11512445 ccacatgtgacattgtggttggccaatgtcaccaa 11512411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 20286892 - 20286953
Alignment:
Q  73 acggataatacttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgt 133  Q
    |||||||  |||||||||||||| |||||| |||||||| |||||||  |||||||||||||    
T  20286892 acggatatcacttgggtgacattatggttggtgacattgatgacattggccaaccacaatgt 20286953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 20286962 - 20286925
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  20286962 ccacatgtgacattgtggttggccaatgtcatcaatgt 20286925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 217
Target Start/End: Complemental strand, 31342063 - 31342031
Alignment:
Q  185 acatgtgacattgtagttggccaatgtcaccaa 217  Q
    |||||||||||||| ||||||||||||||||||    
T  31342063 acatgtgacattgtggttggccaatgtcaccaa 31342031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 28045486 - 28045410
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaa 151  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28045486 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaa 28045410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 50754891 - 50754814
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  50754891 ggataatacttgggtgacattgtggttggtgacattggtgacattatcaaccacaatgttacaagtgtgcaaaacaac 50754814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 9379987 - 9379908
Alignment:
Q  73 acggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||    
T  9379987 acggataatatttgggtgacattgtggttggtgacattggtaacattaccaaccacaatgttacaagtgtgcaaaacaac 9379908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 28739304 - 28739377
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaa 148  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||    
T  28739304 ggataatacttgggtgatattgtggttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaa 28739377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 9885008 - 9884931
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||| |||||||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  9885008 ggatgatacttgggtgatattgtggttggtgacattcgtgacattatcaaccacaatgttacaagtgtgcaaaacaac 9884931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 44381908 - 44381981
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtgtccaaa 147  Q
    |||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||| ||||    
T  44381908 ggataatatttgggtgacattgtggttggtgatattggtgacattgaccaaccacaatgttacacgtgtacaaa 44381981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 35251163 - 35251234
Alignment:
Q  73 acggataatacttgggtgacat--tgtggttgctgacattggtgacattaccaaccacaatgttacaagtgt 142  Q
    ||||||||||||||| ||||||  | |||||| ||| |||||||||||||||||||||||||||||||||||    
T  35251163 acggataatacttggatgacatgatatggttggtgatattggtgacattaccaaccacaatgttacaagtgt 35251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 15928073 - 15928141
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    ||||||||||||||||||||||||         ||||||||||||| ||||||||||||||||||||| |||||||||    
T  15928073 ggataatacttgggtgacattgtg---------attggtgacattatcaaccacaatgttacaagtgtacaaaacaac 15928141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 49200122 - 49200058
Alignment:
Q  79 aatacttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtgt 142  Q
    ||||||| |||||||||||||||| ||| |||| ||||||| |||||||||||||| ||||||||    
T  49200122 aatacttaggtgacattgtggttggtgatattgatgacattgaccaaccacaatgtcacaagtgt 49200058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 6539545 - 6539627
Alignment:
Q  74 cggataatacttgggtgacattgtggttgctgacattggtgacat-----taccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||  |||||||||||||| | |||||||||| ||     |||||||||||||||||||||||| |||||||||    
T  6539545 cggataatacttgc-tgacattgtggttggtaacattggtgatatgatgttaccaaccacaatgttacaagtgtgcaaaacaac 6539627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 10449447 - 10449483
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattg 111  Q
    |||||||||||||||||||||||||||| ||||||||    
T  10449447 ggataatacttgggtgacattgtggttggtgacattg 10449483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 28739413 - 28739447
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaa 217  Q
    |||||||||||||||| ||||||||||||||||||    
T  28739413 ccacatgtgacattgtggttggccaatgtcaccaa 28739447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 47557430 - 47557372
Alignment:
Q  74 cggataatacttgggtgacattgtggttgctgacattggtgacatt-accaaccacaat 131  Q
    |||||||||||| ||||| |||| ||||| |||||||||||||||| | ||||||||||    
T  47557430 cggataatacttaggtgaaattgcggttggtgacattggtgacattgatcaaccacaat 47557372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 50754782 - 50754748
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaa 217  Q
    |||||||||||||||| ||||||||||||||||||    
T  50754782 ccacatgtgacattgtggttggccaatgtcaccaa 50754748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 6539720 - 6539683
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt 119  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  6539720 acttgggtgacattgtggttgatgatattggtgacatt 6539683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 9379876 - 9379839
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  9379876 ccacatgtgacattgtggttggccaatatcaccaatgt 9379839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 9884899 - 9884862
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  9884899 ccacatgtgacattgtggttgaccaatgtcaccaatgt 9884862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 44938955 - 44938895
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtg 141  Q
    ||||||||||||||||| ||  ||||||| |||||||| | ||||||||||| ||||||||    
T  44938955 acttgggtgacattgtgattagtgacattagtgacattgaacaaccacaatggtacaagtg 44938895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 17272864 - 17272789
Alignment:
Q  77 ataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17272864 ataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 17272789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 43500149 - 43500085
Alignment:
Q  74 cggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaa 138  Q
    ||||||||| ||||| || |||||||||| ||| |||||||||||||||||||||||||||||||    
T  43500149 cggataatatttgggcgatattgtggttggtgatattggtgacattaccaaccacaatgttacaa 43500085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 29681940 - 29681854
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacatt---------accaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||| ||||||||||||||||         |||||||||||||||||||||||  ||||||||    
T  29681940 ggataatacttgggtgacattgtggttggtgacattggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaac 29681854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 7211918 - 7211884
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaa 217  Q
    |||||||||||||||| ||||||||||||||||||    
T  7211918 ccacatgtgacattgtggttggccaatgtcaccaa 7211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Complemental strand, 17272757 - 17272723
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaa 217  Q
    |||||||||||||||| ||||||||||||||||||    
T  17272757 ccacatgtgacattgtggttggccaatgtcaccaa 17272723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 5215558 - 5215637
Alignment:
Q  73 acggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||    
T  5215558 acggataatacttgggtgacattgtggttggtaacattggtgacattaccaaccacaatgttacaagtgtacaaaacaac 5215637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 42935445 - 42935516
Alignment:
Q  4 ctataaaattgcaagtttttaagtttattccctacttaatattatccgaggatgcttactagtcatgccacg 75  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| | | |||||||||||||||||||||||    
T  42935445 ctataaaattgcaagtttttaagtttagtccttacttaatattaacgggggatgcttactagtcatgccacg 42935516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 36568871 - 36568794
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||  ||||||||||||||| ||||||| ||||||| | ||||||||||||||||||||| |||||||||    
T  36568871 ggataatacttatgtgacattgtggttggtgacattagtgacataatcaaccacaatgttacaagtgtacaaaacaac 36568794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 19417595 - 19417535
Alignment:
Q  91 acattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  19417595 acattgtggttggtgacattggtgacattaccaaccacaatgtt-caagtgtgcaaaacaac 19417535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 29385305 - 29385353
Alignment:
Q  104 tgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    ||||||| |||| |||||||||||||||||||||||||| |||||||||    
T  29385305 tgacattagtgatattaccaaccacaatgttacaagtgtgcaaaacaac 29385353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 29385446 - 29385394
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgt 133  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  29385446 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgt 29385394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 141
Target Start/End: Original strand, 7137628 - 7137698
Alignment:
Q  72 cacggataatacttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtg 141  Q
    ||||| || ||||||||||||||||  |||| ||| |||||||||||| |||||||||||||| |||||||    
T  7137628 cacgggtagtacttgggtgacattgcagttggtgaaattggtgacattgaccaaccacaatgtcacaagtg 7137698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 9904168 - 9904233
Alignment:
Q  84 ttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtgtccaaaa 148  Q
    |||||||||||| |||||| |||||||||| | ||| | ||||||||||||||||||||| |||||    
T  9904168 ttgggtgacattatggttgttgacattggtaatattgatcaaccacaatgttacaagtgtacaaaa 9904233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 19417442 - 19417479
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt 119  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  19417442 acttgggtgacattgtggttggtgacattggtgacatt 19417479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 29385385 - 29385422
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||| |||||||||||||||||||||    
T  29385385 ccacatgtgacattgtggttggccaatgtcaccaatgt 29385422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 220
Target Start/End: Complemental strand, 19417502 - 19417466
Alignment:
Q  184 cacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19417502 cacatgtgacattgtagttgaccaatgtcaccaatgt 19417466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 9177865 - 9177912
Alignment:
Q  104 tgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaa 151  Q
    |||||||| ||||| ||||||||||||||||| |||||| ||||||||    
T  9177865 tgacattgatgacactaccaaccacaatgttataagtgtgcaaaacaa 9177912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 25879333 - 25879376
Alignment:
Q  108 attggtgacattaccaaccacaatgttacaagtgtccaaaacaa 151  Q
    ||||||||||||| |||||||||||||||||||||  |||||||    
T  25879333 attggtgacattatcaaccacaatgttacaagtgtataaaacaa 25879376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 1839970 - 1840020
Alignment:
Q  84 ttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgt 133  Q
    ||||||||||||||||||| |||||||| |||||||  |||||||||||||    
T  1839970 ttgggtgacattgtggttggtgacattgatgacattggccaaccacaatgt 1840020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 4376340 - 4376414
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtgtccaaaa 148  Q
    |||||||||||| ||||||||||||||| | ||||| ||| ||||   |||||||||||| |||||||| |||||    
T  4376340 ggataatacttgagtgacattgtggttggtaacattcgtgccattggtcaaccacaatgtcacaagtgtacaaaa 4376414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 1840029 - 1839992
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  1840029 ccacatgtgacattgtggttggccaatgtcatcaatgt 1839992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 4376504 - 4376447
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgac-attaccaaccacaatgttacaa 138  Q
    ||||| ||||||||||||||| ||||||||||||| || |||||| ||||||| ||||    
T  4376504 acttgagtgacattgtggttgatgacattggtgacaatgaccaacaacaatgtcacaa 4376447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 12918702 - 12918623
Alignment:
Q  73 acggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  12918702 acggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaaatgtgcaaaacaac 12918623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 39819232 - 39819153
Alignment:
Q  73 acggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||    
T  39819232 acggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatattacaagtgtgcaaaacaac 39819153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 15562372 - 15562294
Alignment:
Q  74 cggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    ||||||||| |||||||||||| |||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||    
T  15562372 cggataatatttgggtgacattatggttggtgatattggtgacattaccaatcacaatgttacaagtgtgcaaaacaac 15562294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 39819060 - 39819112
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgt 133  Q
    ||||||||||||||||||||| ||||||||||||||||  |||||||||||||    
T  39819060 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgt 39819112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 7755469 - 7755426
Alignment:
Q  109 ttggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||| ||||||||||||||||| |||||||||    
T  7755469 ttggtgacattaccaatcacaatgttacaagtgtacaaaacaac 7755426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Original strand, 12918496 - 12918543
Alignment:
Q  73 acggataatactt-gggtgacattgtggttgctgacattggtgacatt 119  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  12918496 acggataatactttgggtgacattgtggttggtgacattggtgacatt 12918543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 12918591 - 12918554
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||| |||||||||||||||||||||    
T  12918591 ccacatgtgacattgtggttggccaatgtcaccaatgt 12918554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 39819121 - 39819084
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||| |||||||||||||||||||||    
T  39819121 ccacatgtgacattgtggttggccaatgtcaccaatgt 39819084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 12918535 - 12918582
Alignment:
Q  87 ggtgacattgtggttgctgacattggtgacatt-accaaccacaatgt 133  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||    
T  12918535 ggtgacattgtggttgatgacattggtgacattggccaaccacaatgt 12918582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 5913522 - 5913583
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtgtc 143  Q
    ||||||||||||||||||||| ||||||| ||||||||  ||||||||||| |||||| ||||    
T  5913522 acttgggtgacattgtggttggtgacatt-gtgacattggccaaccacaatcttacaaatgtc 5913583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 2543735 - 2543812
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||    
T  2543735 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaac 2543812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 11448225 - 11448147
Alignment:
Q  74 cggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |||||||||    
T  11448225 cggataatacttgggtgacattgtggttggtgatattggtgacattaccaaccacaatgttataagtgtgcaaaacaac 11448147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 16193889 - 16193850
Alignment:
Q  74 cggataatacttgggtgacattgtggttgctgacattggt 113  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  16193889 cggataatacttgggtgacattgtggttggtgacattggt 16193850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 183 - 217
Target Start/End: Original strand, 2543843 - 2543877
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaa 217  Q
    |||||||||||||||| ||||||||||||||||||    
T  2543843 ccacatgtgacattgtggttggccaatgtcaccaa 2543877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 28581731 - 28581768
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattgg 112  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  28581731 ggataatacttggctgacattgtggttggtgacattgg 28581768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 369578 - 369542
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattg 111  Q
    |||||||||||| ||||||||||||||| ||||||||    
T  369578 ggataatacttgagtgacattgtggttggtgacattg 369542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 5150619 - 5150663
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacatt 119  Q
    ||||||||||| |||||||||||| ||| |||||||| |||||||    
T  5150619 ggataatactttggtgacattgtgcttggtgacattgatgacatt 5150663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 31846780 - 31846859
Alignment:
Q  73 acggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||||||||| |||||||||    
T  31846780 acggataatacttgggtgacattatggttggtgacattcgtgacattaccaaccaaaatgttacaagtgtgcaaaacaac 31846859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 31012296 - 31012217
Alignment:
Q  73 acggataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    ||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| |||||||| | |||||||||    
T  31012296 acggataatacttaggtgacattgtggttggtgacattagtgacattaccaaccacaatattacaagtatgcaaaacaac 31012217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 91 - 152
Target Start/End: Complemental strand, 6608500 - 6608439
Alignment:
Q  91 acattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  6608500 acattgtggttggtgacattggtgacattaccaaccacaatgttacaagtctgcaaaacaac 6608439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 2254698 - 2254622
Alignment:
Q  76 gataatacttgggtgacattgtggttgctgacattggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    ||||||||||  ||||||||||||||  |||||||| ||| |||||||| ||||||||||||||||| |||||||||    
T  2254698 gataatacttatgtgacattgtggttcgtgacattgatgatattaccaatcacaatgttacaagtgtacaaaacaac 2254622  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 6607420 - 6607463
Alignment:
Q  109 ttggtgacattaccaaccacaatgttacaagtgtccaaaacaac 152  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  6607420 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaac 6607463  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 32008402 - 32008335
Alignment:
Q  77 ataatacttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtgtc 143  Q
    |||| ||||||||||||||||||||| ||||||| |||| ||| |||||||| |||||||||||||||    
T  32008402 ataacacttgggtgacattgtggttggtgacattagtgatattgaccaaccaaaatgttacaagtgtc 32008335  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 46321496 - 46321429
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtgtccaaaa 148  Q
    ||||| ||||||||||||||| ||| |||||||||||| |||||||||||||| |||| ||| |||||    
T  46321496 acttgagtgacattgtggttggtgatattggtgacattgaccaaccacaatgtcacaactgtacaaaa 46321429  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 31846952 - 31846900
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgt 133  Q
    ||||||||||||||||||||| |||||||||||| |||  |||||||||||||    
T  31846952 acttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgt 31846900  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 54613030 - 54613082
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgt 133  Q
    ||||||||||||||||||||| ||||||| ||| |||| ||||||||||||||    
T  54613030 acttgggtgacattgtggttggtgacattagtggcattgaccaaccacaatgt 54613082  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 15031965 - 15032020
Alignment:
Q  77 ataatacttgggtgacattgtggttgctgacattggtgacatt-accaaccacaat 131  Q
    |||| ||||||||||||||||||||| ||| ||| |||||||| ||||||||||||    
T  15031965 ataacacttgggtgacattgtggttgatgatattcgtgacattgaccaaccacaat 15032020  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 44023092 - 44023038
Alignment:
Q  87 ggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtg 141  Q
    |||||||||||||| | ||||||| |||||||| ||||||||||||||||||||||    
T  44023092 ggtgacattgtggtgg-tgacattagtgacattgaccaaccacaatgttacaagtg 44023038  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 31846891 - 31846928
Alignment:
Q  183 ccacatgtgacattgtagttggccaatgtcaccaatgt 220  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  31846891 ccacatgtgacattgtggttggccaatatcaccaatgt 31846928  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 31012124 - 31012176
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgt 133  Q
    ||||| ||||||||||||||| ||| | |||||||||| ||||||||||||||    
T  31012124 acttgtgtgacattgtggttggtgataatggtgacattgaccaaccacaatgt 31012176  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 43465256 - 43465176
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacattaccaa---ccacaatgttacaagtgtccaaaacaac 152  Q
    ||||||||||||| ||||||| |||||| |||||||||||| ||||||||   |||||||||||||||||| |||||||||    
T  43465256 ggataatacttggatgacattctggttggtgacattggtgaaattaccaaccaccacaatgttacaagtgtgcaaaacaac 43465176  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 1605085 - 1605038
Alignment:
Q  72 cacggataatacttgggtgacattgtggttgctgacattggtgacatt 119  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||    
T  1605085 cacggataatacttgggtgacattgtagttggtgacattggtgacatt 1605038  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 16687512 - 16687585
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacatta-ccaaccacaatgttacaagtgtccaaa 147  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||| | |||||||||||  ||||||| ||||    
T  16687512 ggataatacttggatgacattgtggttggtgatattggtgacattagctaaccacaatgtcccaagtgtacaaa 16687585  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 147
Target Start/End: Complemental strand, 31470913 - 31470839
Alignment:
Q  75 ggataatacttggg-tgacattgtggttgctgacattggtgacatta-ccaaccacaatgttacaagtgtccaaa 147  Q
    |||||||||||||| ||| |||||||||| ||  ||||||||||||  ||||||||||||| |||||||| ||||    
T  31470913 ggataatacttggggtgatattgtggttggtggtattggtgacattggccaaccacaatgtcacaagtgtacaaa 31470839  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 32857136 - 32857067
Alignment:
Q  79 aatacttgggtgacattgtggttgctgacattggtgacatta-ccaaccacaatgttacaagtgtccaaa 147  Q
    |||| |||||||| |||||||||| |||||||| ||||||   ||||||||||||| |||||||| ||||    
T  32857136 aatatttgggtgatattgtggttgatgacattgatgacataggccaaccacaatgtcacaagtgtacaaa 32857067  T

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Target: scaffold0343 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 119
Target Start/End: Original strand, 12226 - 12270
Alignment:
Q  75 ggataatacttgggtgacattgtggttgctgacattggtgacatt 119  Q
    ||||||||||||||||||||||| |||| |||||||| |||||||    
T  12226 ggataatacttgggtgacattgtagttggtgacattgatgacatt 12270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 12365 - 12305
Alignment:
Q  82 acttgggtgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtgtcc 144  Q
    ||||||||||||||||||  |||||||||| ||||||| |||||||||||||| ||||||||||    
T  12365 acttgggtgacattgtgg--gctgacattg-tgacattgaccaaccacaatgtcacaagtgtcc 12305  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 507720 - 507773
Alignment:
Q  89 tgacattgtggttgctgacattggtgacatt-accaaccacaatgttacaagtg 141  Q
    |||||||||| ||| |||||||||||||||| ||||| |||||| |||||||||    
T  507720 tgacattgtgattgatgacattggtgacattgaccaatcacaatattacaagtg 507773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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