View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_64 (Length: 220)
Name: NF8143_low_64
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_64 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 220
Target Start/End: Original strand, 1482586 - 1482798
Alignment:
| Q |
8 |
accctaatgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
107 |
Q |
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| T |
1482586 |
accctaatgtccatgaggtgaattgaaaaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatt |
1482685 |
T |
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| Q |
108 |
tgggctgagcttaatcatcttctgatgatttatagggttccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
207 |
Q |
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| T |
1482686 |
tgggctgagcttaatcatcttctgatgatttatagggatccaaaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
1482785 |
T |
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| Q |
208 |
ctgtatacatttt |
220 |
Q |
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| T |
1482786 |
ctgtatacatttt |
1482798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 36717320 - 36717531
Alignment:
| Q |
14 |
atgtccatgaggtgaattgaagaagatttgaagtgcagaaaaactattgaagatagttgaaggagatatcatagagcaaaaggaaaaggagatttgggct |
113 |
Q |
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| T |
36717320 |
atgtccatgaggtgaattgaagaagatttaaagtgcaggaaaaa-attaaagagaattgaaggagaaatcttagagcaaatgggaaaggagatttgggct |
36717418 |
T |
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| Q |
114 |
gagcttaatcatcttctgatgatttatagggttcca------aaagcaaagaacttggtgatttttccaatctgcttaatcttctgcttgaagattaaag |
207 |
Q |
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| T |
36717419 |
gagcttaatcatcttctgatgatttatagggcttcaagaaggaaagcagagaacttggtgtttgatccagtttgtgtaatcttctacttgaagattatag |
36717518 |
T |
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| Q |
208 |
ctgtatacatttt |
220 |
Q |
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| T |
36717519 |
ctgtatacatttt |
36717531 |
T |
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