View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_7 (Length: 489)
Name: NF8143_low_7
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 35 - 473
Target Start/End: Complemental strand, 48498132 - 48497702
Alignment:
| Q |
35 |
gaaaactacatcaaactgagttttttcagttcatttctaaaattgttaataatagttcggttcgataagtagttcagttcgtttttctgnnnnnnnnctc |
134 |
Q |
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| T |
48498132 |
gaaaattatatcaaatcgagttttttcagttcatttttagaattgttaataatggttcagttcgataaacggttcggttcgttttt---tattttttttc |
48498036 |
T |
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| Q |
135 |
tctctccacccaacatgctagaatgaacatacaccaagaaaagggaaacttataatacaacctcggagagaaaaatattgaacaatgaagtaaaataatt |
234 |
Q |
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| T |
48498035 |
tctctccacccaacatgctagaatgaacttacaccaagaaaagggaaacttataatacaacttcggagagaaaaatattgaacaatgaagtaaaataatt |
48497936 |
T |
|
| Q |
235 |
aatattagtgtgagcgaaagtgagagagttaggaaatttaatggtgttaagttagaatggaggtgattgtcaatttgataataataagagagaga--ggt |
332 |
Q |
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| T |
48497935 |
aatattagtgtgagcgaaagtgagagagttaggaaatttaatggtgttaagttagaatggaggtgattgtcaatttgataataataagagagagaggggt |
48497836 |
T |
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| Q |
333 |
tagtttgttcaaaaaataagagggaggttagtgtctagtttaatgagaaatgttaataacaaatattttaacacacactatttagcatac-tcttttaat |
431 |
Q |
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| T |
48497835 |
tagtttggtcaaaaaataagagggaggttagtgtctagtttaaagagaaatgctaacaacaaacaatttaatacac--------gcacactttttttgat |
48497744 |
T |
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| Q |
432 |
ttgttaaaattcacatgaaatccactaaatttacgtgggatc |
473 |
Q |
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| T |
48497743 |
ttgttaaaattcacatgaaatccactaaatttacgtgggatc |
48497702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 40530087 - 40530049
Alignment:
| Q |
426 |
tttaatttgttaaaattcacatgaaatccactaaattta |
464 |
Q |
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| T |
40530087 |
tttaatttgttaaaattcacaggagatccactaaattta |
40530049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 464
Target Start/End: Complemental strand, 23318023 - 23317985
Alignment:
| Q |
426 |
tttaatttgttaaaattcacatgaaatccactaaattta |
464 |
Q |
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| T |
23318023 |
tttaattggttaaaattcacatgagatccactaaattta |
23317985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 390 - 449
Target Start/End: Complemental strand, 7403234 - 7403174
Alignment:
| Q |
390 |
aacaaatattttaacacacactatttagcatactct-tttaatttgttaaaattcacatga |
449 |
Q |
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|||| |||||||||||||||||||| | || ||||| ||| ||| |||||||||||||||| |
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| T |
7403234 |
aacacatattttaacacacactattcaacacactctctttgattggttaaaattcacatga |
7403174 |
T |
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