View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8143_low_9 (Length: 480)
Name: NF8143_low_9
Description: NF8143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8143_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 459
Target Start/End: Complemental strand, 4928847 - 4928404
Alignment:
| Q |
15 |
agagacagaaatgagagcagattggaagggtggtggaattaagaaaaagggtggtagttgtcacatgatttccaatagtaccaaagggaccatcctcatc |
114 |
Q |
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| T |
4928847 |
agagacagaaatgaaagcagataggaagggtggtggaattgagaaaaagggtggtagttgtcacatgatttccaatagtactaaagggaccatcctcatc |
4928748 |
T |
|
| Q |
115 |
tgtatccattatgtaggtttattacaataatatttatttatagagaacaagtagcctgtcccaattttgatatattcttttcatatatatatannnnnnn |
214 |
Q |
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| T |
4928747 |
tgtatccattatgtaggtttattacaataatatttatttatagagaacaagtagcctgtcccaattttgatatattcttttca-atatatatatattttc |
4928649 |
T |
|
| Q |
215 |
nnnnnnnccttagaaactaaaatagtctatctactatatacttattgaaattgatgactcttgactctgctgctgaatgaattatataccaaaagtagtc |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4928648 |
tttttttccttagaaactaaaatagtctatctactatatacttattgaaattgatgactcttgactctgctgctgaatgaattatataccaaaagtagtc |
4928549 |
T |
|
| Q |
315 |
atctcaaaatcaggtataacaatttcaaactcctctcttttccatccctttcttttacatacccttcaacccatcaaagaagatttagcagcatatccaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4928548 |
atctcaaaatcaggtataacaatttcaaactcctctcttttccatccctttcttttacatacccttcaacccatcaaagaagatttagcagcatatccaa |
4928449 |
T |
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| Q |
415 |
gatgtctgattgaagatatggtcggtttatgcaattgcacacaat |
459 |
Q |
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| T |
4928448 |
gatgtctgattgaagatatggttggtttatgcaattgcacacaat |
4928404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 35846374 - 35846404
Alignment:
| Q |
112 |
atctgtatccattatgtaggtttattacaat |
142 |
Q |
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| T |
35846374 |
atctgtatccattatgtaggtttattacaat |
35846404 |
T |
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