View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8144_low_1 (Length: 664)
Name: NF8144_low_1
Description: NF8144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8144_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 8 - 449
Target Start/End: Original strand, 53829921 - 53830367
Alignment:
| Q |
8 |
gagatggacatcaaatctcaacgatggagccagtcacacatggcgcttatggtggtggaatgtatggcacagaaaaagggcaaccagaaaaacaaaccaa |
107 |
Q |
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| T |
53829921 |
gagaaggacctcaaatctcaacgatggagccagtcacacatggcgcttatggtggtggaatgtatggcacagaaaaagggcaaccagaaaaacaaaccaa |
53830020 |
T |
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| Q |
108 |
acaaccagcaagtgagactcaaagtgctgatggacctgttgataaggacactatcaagcccaaacataatcctcctccttcatctggggatcgtgatata |
207 |
Q |
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| T |
53830021 |
acaaccagcaagtgagactcaaagtgctgatggtcctgttgataaggacactatcaagcccaaacataatcctcctccttcatctggggatcgtgatata |
53830120 |
T |
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| Q |
208 |
gacatcactggccagtcctatatccagtaataacaacatatatgt-aaatgcttagcctaattagtataattaggacgttattttcttatcttaaaatat |
306 |
Q |
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| T |
53830121 |
gacatcactggccagtcctatatccagtaataacaacatatatgtaaaatacttagcctaattagtataattaggacgttattttctgatcttaaaatat |
53830220 |
T |
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| Q |
307 |
at----attaggacgttcatcttttaatttaaggggtcttttttgtttctgttgtcattggtggctgtattttcttttaataagttttcttccatcattt |
402 |
Q |
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| T |
53830221 |
atattaattaggacgttcatcttttaatttaaggggtcttttttgtttctgttgtcattggtggctgtattttcttttaataagttttcttccatcattt |
53830320 |
T |
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| Q |
403 |
ccctcatgtataaactttggtgatccacttcgtaatgttaatgagcg |
449 |
Q |
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| T |
53830321 |
ccctcatgtataaactgtggtgatccacttcgtaatgttaatgagcg |
53830367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 520 - 664
Target Start/End: Original strand, 53830367 - 53830510
Alignment:
| Q |
520 |
gtgtaaggatcaaatggaatggtaatttatttattttggtttgaaaatcgaatggtaattcaaacttttgcctaacttcaatgtttaattatgattattt |
619 |
Q |
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| T |
53830367 |
gtgtaaggatcaaatggaatggtaatttatttattttggtttgaaaatcgaatggtaatttaaacttttgcctaacttcaatgtttaattatgattattt |
53830466 |
T |
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| Q |
620 |
tgttaaaagtgtatcaaatagttagtgtttgtttatgtcattcct |
664 |
Q |
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| T |
53830467 |
tgtt-aaagtgtatcaaataattagtgtttgtttatgtcattcct |
53830510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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