View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8144_low_12 (Length: 201)
Name: NF8144_low_12
Description: NF8144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8144_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 30273335 - 30273505
Alignment:
| Q |
17 |
agtttgcaaaagcgactaaaaaatttgagtgaatatatgcacctcaaggccaacgcagaatgagtgtaattttgatccccattgttcagcagctttagtg |
116 |
Q |
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| T |
30273335 |
agtttgcgaaagtgattcaaaaatttaagtgtatatatgcacctcaaggccaacgcagaatgagtgtaattttgatccccattgttcagcagctttagtg |
30273434 |
T |
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| Q |
117 |
gttgctaggtagcgagaagtgatggatgcaaccaatgatgagtccaaacctccagatagtagaacaccaaa |
187 |
Q |
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| T |
30273435 |
gttgctaggtagcgagaagtgatggatgcaaccaatgatgagtccaaacctccagatagtagaacaccaaa |
30273505 |
T |
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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 25966353 - 25966465
Alignment:
| Q |
72 |
cagaatgagtgtaattttgatccccattgttcagcagctttagtggttgctaggtagcgagaagtgatggatgcaaccaatgatgagtccaaacctccag |
171 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||| | || ||||| | |||||||||||| || ||||||||||||| |
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| T |
25966353 |
cagaatgagtgtaattttgctccccattgtttagcagcttttgtgccagccaggtatctagcagtgactgctgcaaccaatgaagaatccaaacctccag |
25966452 |
T |
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| Q |
172 |
atagtagaacacc |
184 |
Q |
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| T |
25966453 |
atagtaaaacacc |
25966465 |
T |
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