View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8144_low_13 (Length: 201)
Name: NF8144_low_13
Description: NF8144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8144_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 42528939 - 42528773
Alignment:
| Q |
15 |
tttggtgttgtacatcgattctattaggactttgttgtggctgctgtggaggctgcaatgcattatgcggcatggctttcaatgttaatggagaagtagc |
114 |
Q |
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| T |
42528939 |
tttgttgttgtacatcgattctattaggactttgttgtggctgctgtggaggctgcaatgcattacgcggcatggctttcaatgttaatggagaagtagc |
42528840 |
T |
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| Q |
115 |
agtttttacagattggatttttcctttggaaataatgtacacagtgcagaactcaggtgccccttta |
181 |
Q |
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| T |
42528839 |
agtttttacagattggatttttcctttggaaataatgtacacagtgcagaattcaggtgccccttta |
42528773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 42520715 - 42520596
Alignment:
| Q |
65 |
ggctgcaatgcattat---gcggcatggctttcaatgttaatggagaagtagcagtttttacagattggatttttcctttggaaataatgtacacagtgc |
161 |
Q |
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| T |
42520715 |
ggctgcaatgcattgttacgcggcatggctttcggtgttaatggagaagtagcagttttaacagattggatttttcctttggaaataatgtacacggtgc |
42520616 |
T |
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| Q |
162 |
agaactcaggtgccccttta |
181 |
Q |
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| T |
42520615 |
agaactcaggtgccccttta |
42520596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 42520748 - 42520710
Alignment:
| Q |
20 |
tgttgtacatcgattctattaggactttgttgtggctgc |
58 |
Q |
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| T |
42520748 |
tgttgtacattgattctatcaggactttgttgtggctgc |
42520710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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