View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8144_low_2 (Length: 537)
Name: NF8144_low_2
Description: NF8144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8144_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 110 - 481
Target Start/End: Complemental strand, 4167352 - 4166981
Alignment:
| Q |
110 |
attgtaagtgacatacatcagttacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaagaatcaaac |
209 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4167352 |
attgtaagtgacatacatcagttacgaattagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaaaaatcaaac |
4167253 |
T |
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| Q |
210 |
acatgacaaagaaatgttgaaatatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattctatctat |
309 |
Q |
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| T |
4167252 |
acgtgacgaagaaatgttgaaatatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattctatctat |
4167153 |
T |
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| Q |
310 |
agctagggaaagatttctctttgcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcatct |
409 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4167152 |
agctagggaaagatttctcttggcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttcacct |
4167053 |
T |
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| Q |
410 |
gaccatgtctgcaaaacccaaatttagatgcaatatatgttgcaaataagaccaaaattgaaaacatgaaat |
481 |
Q |
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| T |
4167052 |
gaccatgtctgcaaaacccaaatttagatgcaatatatgttgcaaatcagaccgaaagtgaaagcatgaaat |
4166981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 110 - 481
Target Start/End: Complemental strand, 4151586 - 4151212
Alignment:
| Q |
110 |
attgtaagtgacatacatcagtt---acgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaagaatca |
206 |
Q |
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| T |
4151586 |
attgtaagtgacagacatcagtttatacgaaatagttggatatagcagacgatgtaatctacatgataccatggtctccaaattaaacatggaaaaatca |
4151487 |
T |
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| Q |
207 |
aacacatgacaaagaaatgttgaaatatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaatcttaaacattctatc |
306 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4151486 |
aacacgtgacgaagaaatgttgaaatatagaaaatgaaacaaaatagaaacgatatttcggtaagttgcaggaaaacaaataaatcttaaacattctatc |
4151387 |
T |
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| Q |
307 |
tatagctagggaaagatttctctttgcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttca |
406 |
Q |
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| T |
4151386 |
tatagctagggaaagatttctcttggcaaaattgttgacacttactccgatctcttggaaaaactaatgcacctcataattctctagatagtatccttca |
4151287 |
T |
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| Q |
407 |
tctgaccatgtctgcaaaacccaaatttagatgcaatatatgttgcaaataagaccaaaattgaaaacatgaaat |
481 |
Q |
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| T |
4151286 |
cctgaccatgtctgcaaaacccaaatttagatgcaatatatgttgcaaatcagaccgaaagtgaaagcatgaaat |
4151212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 4167547 - 4167474
Alignment:
| Q |
39 |
gtaatattatagtgtgctaataataatctgcgttacatgcaggacttgatataaaatgaaattcatcgagcatt |
112 |
Q |
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| T |
4167547 |
gtaatattatagtgtgctaataataatctgcgttacatgcaggacttgatataaaatgaaattcatcgagcatt |
4167474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 232 - 308
Target Start/End: Complemental strand, 7021244 - 7021167
Alignment:
| Q |
232 |
tatagaaaatgaaacaaaatagaaacgataattcggtaagttgcaggaaaacaaataaa-tcttaaacattctatcta |
308 |
Q |
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| T |
7021244 |
tatagaaaatgaaacaaaatagaaacgataattcaataagttgcaggaaaataaataaattcttaaacatgctatcta |
7021167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 537
Target Start/End: Complemental strand, 4150882 - 4150835
Alignment:
| Q |
490 |
attcaatccttactaaaggagcatcagagagagttgtaatgtatctac |
537 |
Q |
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| T |
4150882 |
attcaatccttactatacgagcatcagagagagttgtaatgtatctac |
4150835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 490 - 537
Target Start/End: Complemental strand, 4166651 - 4166604
Alignment:
| Q |
490 |
attcaatccttactaaaggagcatcagagagagttgtaatgtatctac |
537 |
Q |
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||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
4166651 |
attcaatccttactatacgagcatcagagagagttgtaatgtatctac |
4166604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 7021325 - 7021282
Alignment:
| Q |
136 |
aaatagttggatatagcagacgatgtaatctacatgataccatg |
179 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||| |
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| T |
7021325 |
aaatagttggatacagcagacgatgtaatctatatgataccatg |
7021282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 4152241 - 4152183
Alignment:
| Q |
59 |
taataatctgcgttacatgcaggacttgata-----taaaatgaaattcatcgagcatt |
112 |
Q |
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| T |
4152241 |
taataatctgcgttacatgcaggacttgatagtagctaaaatgaaattcatcaagcatt |
4152183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 467
Target Start/End: Complemental strand, 7021054 - 7021004
Alignment:
| Q |
417 |
tctgcaaaacccaaatttagatgcaatatatgttgcaaataagaccaaaat |
467 |
Q |
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|||| |||||| ||||||||| |||||||||||||||||| |||| ||||| |
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| T |
7021054 |
tctgtaaaacctaaatttagaggcaatatatgttgcaaatcagacaaaaat |
7021004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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