View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8144_low_3 (Length: 522)

Name: NF8144_low_3
Description: NF8144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8144_low_3
NF8144_low_3
[»] chr7 (13 HSPs)
chr7 (154-452)||(35933600-35933898)
chr7 (1-159)||(35938689-35938847)
chr7 (84-174)||(35946134-35946224)
chr7 (407-462)||(35933055-35933110)
chr7 (84-163)||(35957353-35957432)
chr7 (219-273)||(36223582-36223636)
chr7 (84-174)||(35976797-35976887)
chr7 (84-174)||(35998209-35998299)
chr7 (1-49)||(36222153-36222201)
chr7 (15-49)||(35957461-35957495)
chr7 (1-46)||(35981485-35981530)
chr7 (1-46)||(36002897-36002942)
chr7 (1-49)||(32727039-32727087)
[»] chr1 (2 HSPs)
chr1 (218-462)||(18124774-18125018)
chr1 (84-163)||(18125073-18125152)
[»] chr2 (2 HSPs)
chr2 (97-265)||(26329285-26329453)
chr2 (1-49)||(26329195-26329243)
[»] chr4 (2 HSPs)
chr4 (228-265)||(19030802-19030839)
chr4 (228-264)||(49352843-49352879)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 154 - 452
Target Start/End: Complemental strand, 35933898 - 35933600
Alignment:
Q  154 atatagatgaattccattcaatgtcatttcttatagattttgtggattgtggccacctctaccaattcaaagttcatgatttggtgcacgatcttgcatt 253  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35933898 atatagatgaattccattcaaggtcatttcttatagattttgtggattgtggccacctctaccaattcaaagttcatgatttggtgcacgatcttgcatt 35933799  T
Q  254 gtatgttgcaaaggaggagtgtgttcttgtaaattcccatactcggaatatactgaagcaagtgaggcatgtgtcaattgttgaaaaatgttcacttgac 353  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35933798 gtatgttgcaaaggaggagtgtgttctagtaaattcccatactcggaatataccgaagcaagtgaggcatgtgtcaattgttgaaaaatgttcacttgac 35933699  T
Q  354 cgtgctatgttcctggagtccaaaaaagtaagaactatattgtttcccaatcgtggagtgggtcttgacagtgattttcttttggatacatgggtatca 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35933698 cgtgctatgttcctggagtccaaaaaagtaagaactatattgtttcccaatcgtggagtgggtcttgacagtgattttcttttgcatacatgggtatca 35933600  T

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Target: chr7; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 35938847 - 35938689
Alignment:
Q  1 cctacttgaggcactgttttgcttatttttccctatatcccaaagattacaccttccgcacttatagatgcagtattgctaaactttgggtagcccttgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  35938847 cctacttgaggcactgttttgcttatttttccctatatcccaaagattacaccttccgcgattatagatgcagtattgctaaactttgggtagcccttgg 35938748  T
Q  101 attagttgaatcccgaaatggaagtgaaaatatggagaatatttcaagagaatatatag 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35938747 attagttgaatcccgaaatggaagtgaaaatatggagaatatttcaagagaatatatag 35938689  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 35946224 - 35946134
Alignment:
Q  84 ctttgggtagcccttggattagttgaatcccgaaatggaagtgaaaatatggagaatatttcaagagaatatatagatgaattccattcaa 174  Q
    |||||||||||||| ||||||||| |||||  |||||||| ||||||  |||||| |||| ||||| ||||||| |||||||| |||||||    
T  35946224 ctttgggtagccctcggattagttcaatccgtaaatggaattgaaaagctggagagtattgcaagaaaatatattgatgaattgcattcaa 35946134  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 407 - 462
Target Start/End: Complemental strand, 35933110 - 35933055
Alignment:
Q  407 tggagtgggtcttgacagtgattttcttttggatacatgggtatcaagatacaaat 462  Q
    |||||||||||||||| |||||| |||||||||||||||| | |||||||||||||    
T  35933110 tggagtgggtcttgactgtgattctcttttggatacatggatttcaagatacaaat 35933055  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 35957432 - 35957353
Alignment:
Q  84 ctttgggtagcccttggattagttgaatcccgaaatggaagtgaaaatatggagaatatttcaagagaatatatagatga 163  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||  |||| | |||| ||||  ||||||| |||||    
T  35957432 ctttgggtagcccttggattagttcaatccctaaatggaagtgaaaagctggaaagtattgcaaggaaatatattgatga 35957353  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 36223582 - 36223636
Alignment:
Q  219 ttcaaagttcatgatttggtgcacgatcttgcattgtatgttgcaaaggaggagt 273  Q
    |||||||| ||||||||| | ||||||||||||||||||||||| ||||||||||    
T  36223582 ttcaaagtgcatgatttgatacacgatcttgcattgtatgttgcgaaggaggagt 36223636  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 35976887 - 35976797
Alignment:
Q  84 ctttgggtagcccttggattagttgaatcccgaaatggaagtgaaaatatggagaatatttcaagagaatatatagatgaattccattcaa 174  Q
    ||||||||||||| |||||||||| |||| | | | |||||||||||  |||||| |||| ||||| ||||||| ||||| || |||||||    
T  35976887 ctttgggtagcccatggattagttcaatcgctacagggaagtgaaaagctggagagtattgcaagaaaatatattgatgagttgcattcaa 35976797  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 35998299 - 35998209
Alignment:
Q  84 ctttgggtagcccttggattagttgaatcccgaaatggaagtgaaaatatggagaatatttcaagagaatatatagatgaattccattcaa 174  Q
    ||||||||||||| |||||||||| |||| | | | |||||||||||  |||||| |||| ||||| ||||||| ||||| || |||||||    
T  35998299 ctttgggtagcccatggattagttcaatcgctacagggaagtgaaaagctggagagtattgcaagaaaatatattgatgagttgcattcaa 35998209  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36222153 - 36222201
Alignment:
Q  1 cctacttgaggcactgttttgcttatttttccctatatcccaaagatta 49  Q
    |||| |||||||| |||||||||||||||||| | ||||||||||||||    
T  36222153 cctatttgaggcattgttttgcttatttttccttgtatcccaaagatta 36222201  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 49
Target Start/End: Complemental strand, 35957495 - 35957461
Alignment:
Q  15 tgttttgcttatttttccctatatcccaaagatta 49  Q
    |||||||||||||||||||| ||||||||||||||    
T  35957495 tgttttgcttatttttccctttatcccaaagatta 35957461  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35981530 - 35981485
Alignment:
Q  1 cctacttgaggcactgttttgcttatttttccctatatcccaaaga 46  Q
    |||| |||||||| ||||||||||| |||||||| |||||||||||    
T  35981530 cctatttgaggcagtgttttgcttacttttccctctatcccaaaga 35981485  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 36002942 - 36002897
Alignment:
Q  1 cctacttgaggcactgttttgcttatttttccctatatcccaaaga 46  Q
    |||| |||||||| ||||||||||| |||||||| |||||||||||    
T  36002942 cctatttgaggcagtgttttgcttacttttccctctatcccaaaga 36002897  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 32727087 - 32727039
Alignment:
Q  1 cctacttgaggcactgttttgcttatttttccctatatcccaaagatta 49  Q
    |||| |||||||| ||||||||||  |||||||| ||||||||||||||    
T  32727087 cctatttgaggcaatgttttgctttcttttccctttatcccaaagatta 32727039  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 462
Target Start/End: Complemental strand, 18125018 - 18124774
Alignment:
Q  218 attcaaagttcatgatttggtgcacgatcttgcattgtatgttgcaaaggaggagtgtgttcttgtaaattcccatactcggaatatactgaagcaagtg 317  Q
    ||||||||| ||||||||||| || |||||| ||||||||||||| || | ||||| | |  | ||| | || |||| ||  |||||||   ||||||||    
T  18125018 attcaaagtacatgatttggtacatgatctttcattgtatgttgctaaagcggagtttctagtggtagactcacatattcaaaatatacctgagcaagtg 18124919  T
Q  318 aggcatgtgtcaattgttgaaaaatgttcacttgaccgtgctatgttcctggagtccaaaaaagtaagaactatattgtttcccaatcgtggagtgggtc 417  Q
     | ||| | ||||||||||||||   |||||||| || | || | ||||   |||| | ||| || |||| |||||||||||| | |  |||||||||||    
T  18124918 cgacatttatcaattgttgaaaatgattcacttggccatactttattccccaagtcaagaaatgtgagaagtatattgtttcctattgatggagtgggtc 18124819  T
Q  418 ttgacagtgattttcttttggatacatgggtatcaagatacaaat 462  Q
    |||| ||||| | ||||||| ||| |||| |||||||||||||||    
T  18124818 ttgatagtgaatctcttttgtataaatggatatcaagatacaaat 18124774  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 18125152 - 18125073
Alignment:
Q  84 ctttgggtagcccttggattagttgaatcccgaaatggaagtgaaaatatggagaatatttcaagagaatatatagatga 163  Q
    |||||||||||||||||||||||| || |||| || |||||||||||  | ||| ||||| ||||||||||||| |||||    
T  18125152 ctttgggtagcccttggattagttcaaccccggaacggaagtgaaaaactagaggatattgcaagagaatatattgatga 18125073  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 265
Target Start/End: Original strand, 26329285 - 26329453
Alignment:
Q  97 ttggattagttgaatcccgaaatggaagtgaaaatatggagaatatttcaagagaatatatagatgaattccattcaatgtcatttcttatagattttgt 196  Q
    ||||||||||| |||| | |||||||||| ||||  | ||||| ||| ||||||| ||||||||||| || |||||||  |||||||||   |||||||     
T  26329285 ttggattagttcaatcaccaaatggaagtcaaaagctagagaacattgcaagagattatatagatgagttacattcaagatcatttcttcaggattttga 26329384  T
Q  197 ggattgtggccacctctaccaattcaaagttcatgatttggtgcacgatcttgcattgtatgttgcaaa 265  Q
     || | ||||||    |     |||||||| |||||||||||||||||||||||| ||||||| |||||    
T  26329385 agactttggccagacatgtgttttcaaagtacatgatttggtgcacgatcttgcaatgtatgtagcaaa 26329453  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 26329195 - 26329243
Alignment:
Q  1 cctacttgaggcactgttttgcttatttttccctatatcccaaagatta 49  Q
    |||| ||||| || |||||||||||||||||||| | ||||||||||||    
T  26329195 cctatttgagacattgttttgcttatttttccctttttcccaaagatta 26329243  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 19030802 - 19030839
Alignment:
Q  228 catgatttggtgcacgatcttgcattgtatgttgcaaa 265  Q
    |||||||| |||||||||||||||||||||||||||||    
T  19030802 catgatttagtgcacgatcttgcattgtatgttgcaaa 19030839  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 49352843 - 49352879
Alignment:
Q  228 catgatttggtgcacgatcttgcattgtatgttgcaa 264  Q
    |||||||||||||| |||||| |||||||||||||||    
T  49352843 catgatttggtgcatgatctttcattgtatgttgcaa 49352879  T

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