View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8144_low_4 (Length: 464)
Name: NF8144_low_4
Description: NF8144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8144_low_4 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 1144105 - 1143694
Alignment:
| Q |
19 |
catcaaaagggtttataactaatatgaaagaagaaatgaatgaataaaattctcattaattggaaccaaatgagcattacagtttatatagagtttcaag |
118 |
Q |
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| T |
1144105 |
catcaaaagggtttataactaatatgaaagaagaaatgaatgaataaaattctcattaattggaaccaaatgagcattacagtttatatagagtttcaag |
1144006 |
T |
|
| Q |
119 |
atgagtaggataacaatggtacatcaactgtatactatctagatcctaatacagttagttataactaactagctagataacttgtggaacaagttatctc |
218 |
Q |
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| T |
1144005 |
atgagtaggataacaatggtacatcaactgtatactatctagatcctaatacagttagttataactaactagctagataacttgtggaacaagttatctc |
1143906 |
T |
|
| Q |
219 |
tgcaattaattcttattttcccttatttcttcattatgcaatgataacattagtcaatatgttaatttagcttgagattagctc-------aagggtgaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1143905 |
tgcaattaattcttattttcccttatttcttcattatgcaatgataacattagtcaatatgttaatttagcttgagattagctccttaaggaagggtgaa |
1143806 |
T |
|
| Q |
312 |
acagtgcaaagttaaaattgtattcgaaataatcaaggaaacaactcagcctttcatatttataatctaggctaaagtaactggttggatttgattaatt |
411 |
Q |
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| T |
1143805 |
acagtgcaaagttaaaattgtattcga---aatcaaggaaacaactcagcctttcatatttataatctaggctaaagtaactggttggatttgattaatt |
1143709 |
T |
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| Q |
412 |
gttgacatgaaaatg |
426 |
Q |
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| T |
1143708 |
gttgacatgaaaatg |
1143694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 28019126 - 28018915
Alignment:
| Q |
48 |
gaagaaatgaatgaataaaattctcattaattggaaccaaatgagcattacagtttatatagagtttcaagatgagtaggataacaatggtacatcaact |
147 |
Q |
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| T |
28019126 |
gaagaaatgaatgaagcaaattctcattaattg-aatcaaagaagcattacaacttatatagagatcgtagatgaatagaataactatggtacatcaatt |
28019028 |
T |
|
| Q |
148 |
gtatactatctagatcctaatacagttagttataactaactagctagataacttgtggaacaagttatctctgcaattaattcttattttcccttatttc |
247 |
Q |
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|||| | ||||| |||||||||||||||||| ||| ||||| |||||||||||||| | |||| ||||| | ||| ||| | ||| ||||| ||||||| |
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| T |
28019027 |
gtatgcaatctaaatcctaatacagttagttcaaacaaactacctagataacttgtgaagcaagctatctatacaactaacttttagtttcctttatttc |
28018928 |
T |
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| Q |
248 |
ttcattatgcaat |
260 |
Q |
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| T |
28018927 |
ttcattatgcaat |
28018915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 41 - 249
Target Start/End: Complemental strand, 12217430 - 12217219
Alignment:
| Q |
41 |
tatgaaagaagaaatgaat-----gaataaaattctcattaattggaaccaaatgagcattacagtttatatagagtttcaagatgagtaggataacaat |
135 |
Q |
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| T |
12217430 |
tatgaaagaagaaatgaatatgaagagtaaaattctcattgattg-aatcatatgagcattacagcttatatatagatcctagacgactagaacaactat |
12217332 |
T |
|
| Q |
136 |
ggtacatcaactgtatactatctagatcctaatacagttagttataactaactagctagataacttgtggaacaagttatctctgcaattaattcttatt |
235 |
Q |
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|||| ||||||||| ||||||| | |||| |||||||||||| ||||||||| ||||||||||||||||||||||||||| | ||| ||| ||||| | |
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| T |
12217331 |
aatacaccaactgtatgctatctaaaacctattacagttagttacaactaacta-ctagataacttgtggaacaagttatctatacaactaactcttagt |
12217233 |
T |
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| Q |
236 |
ttcccttatttctt |
249 |
Q |
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|||| ||||||||| |
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| T |
12217232 |
ttcctttatttctt |
12217219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 22997344 - 22997289
Alignment:
| Q |
164 |
ctaatacagttagttataactaactagctagataacttgtggaacaagttatctct |
219 |
Q |
| |
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| T |
22997344 |
ctaatacagttagttaaaagtaactaactatataacttttggaacaagttatctct |
22997289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 20216632 - 20216594
Alignment:
| Q |
178 |
tataactaactagctagataacttgtggaacaagttatc |
216 |
Q |
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| T |
20216632 |
tataactaactgtctagataacttgtggaacaagttatc |
20216594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Original strand, 14051 - 14097
Alignment:
| Q |
169 |
acagttagttataactaactagctagataacttgtggaacaagttat |
215 |
Q |
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| T |
14051 |
acagttagttataactaactatctagataacttgtagaactagttat |
14097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 260
Target Start/End: Original strand, 5857941 - 5858153
Alignment:
| Q |
47 |
agaagaaatgaatgaa-taaaattctcattaattggaaccaaatgagcattacagtttatatagagtttcaagatgagtaggataacaatggtacatcaa |
145 |
Q |
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|||||||||||||||| || |||||||||||| | || || | ||||||||| |||||||||| | | ||||||||| ||||| | || | ||| |
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| T |
5857941 |
agaagaaatgaatgaagtataattctcattaac-gaaaacatagtagcattacaacttatatagagatccttgatgagtagaataactacaatataccaa |
5858039 |
T |
|
| Q |
146 |
ctgtatactatctagatcctaatacagttagttataactaactagctagataacttgtggaacaagttatctctgcaattaattcttattttcccttatt |
245 |
Q |
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||||| ||||||| |||||| ||||||||||| ||| ||||| || ||||||||||||| |||| |||| | || ||| | ||| ||||| ||||| |
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| T |
5858040 |
ttgtatgctatcta-atcctatgacagttagttacaaccaactaacttgataacttgtggagcaagctatccatataactaactattagtttcctttatt |
5858138 |
T |
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| Q |
246 |
tcttcattatgcaat |
260 |
Q |
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||||||||||||||| |
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|
| T |
5858139 |
tcttcattatgcaat |
5858153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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