View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8144_low_5 (Length: 421)
Name: NF8144_low_5
Description: NF8144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8144_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 42529153 - 42529550
Alignment:
| Q |
1 |
taattggagttatatcaataaagctaatgcaaacaatgataacgttcttagcatgtgttaagtagacaaaaaaggatactttaagctgtagtacaatatg |
100 |
Q |
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| T |
42529153 |
taattggatttatataaataaagctaatgcaaacaatgataacgttcttagcatgtgttaagtagacaaaaaaggatactttaagctgtagtacaatatg |
42529252 |
T |
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| Q |
101 |
catcattggtatgcataattttatatgaatgttaataacaatagaagtcaatgtgagaaatggtttctgagaatactaacttcattttatggacagatca |
200 |
Q |
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| T |
42529253 |
catcattggtatgcataattttatatgaatgttaataacaatagaagtcaatgtgagaaatggtttctgagaatactaacttcattt-atggacagatca |
42529351 |
T |
|
| Q |
201 |
ccattcacaagaggtgcaagaccaacacacatatcgtatgagtcctcaatctctgactcagacatctcattcgtcagcagtggaaggccaagcattgata |
300 |
Q |
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| T |
42529352 |
ccattcacaagaggtgcaagaccaacacacatatcgtatgagtcctcaatctctgactcagacatctcattcgtcagcagtggaaggccaagcattgata |
42529451 |
T |
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| Q |
301 |
ggatgttccattcattgtatgaagaaatggactctggatatggaatcacccctcgaatttcaggaagctcggattatgatcttagaagcttcggttcgt |
399 |
Q |
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| T |
42529452 |
ggatgttccattcattgtatgaagaaatggactctggaaatggaatcacccctcgaatttcaggaagctcggattatgatcttagaagcttcggttcgt |
42529550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 110 - 399
Target Start/End: Original strand, 42521055 - 42521343
Alignment:
| Q |
110 |
tatgcataattttatatgaatgttaataacaatagaagtcaatgtgagaaatggtttctgagaatactaacttcattttatggacagatcaccattcaca |
209 |
Q |
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| T |
42521055 |
tatgcataaagttatctgaatgttaataacaatataagtctatatgagaaatggttactgagaatagtaacttcattt-atggacagatcaccattcaca |
42521153 |
T |
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| Q |
210 |
agaggtgcaagaccaacacacatatcgtatgagtcctcaatctctgactcagacatctcattcgtcagcagtggaaggccaagcattgataggatgttcc |
309 |
Q |
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| T |
42521154 |
aaaggtgcaagacccacacacagatcgtatgaatcctcaatctctgactcagacatctcattcgtcagcagtggaaggccaagcattgataggatgttcc |
42521253 |
T |
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| Q |
310 |
attcattgtatgaagaaatggactctggatatggaatcacccctcgaatttcaggaagctcggattatgatcttagaagcttcggttcgt |
399 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42521254 |
cttcattgtatgaagaaatggactctggaaatggaatcacccctcgaatttcaggaagctcggattatgatcttagaagcttcggttcgt |
42521343 |
T |
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