View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8144_low_6 (Length: 357)
Name: NF8144_low_6
Description: NF8144
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8144_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 38237623 - 38237950
Alignment:
| Q |
18 |
ctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatcatgagtttgtag |
117 |
Q |
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| T |
38237623 |
ctaacgaagctttgagtttcctatcaaattcagtttgtgtctca-gcttctagtaatggtctagttgttggtcacaccattaatgatcatgagtttgtag |
38237721 |
T |
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| Q |
118 |
tatgtaatccagttataaagttctggtcttcaattccaacccctgagtcatttcgaagaaaccatagttttgctggatatggagtataatgtttcagaag |
217 |
Q |
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| T |
38237722 |
tatgtaatccagttacaaagtcctggtcttcaattccaacccccaagtcatttcaaagaaaccatagttttgctggagatggagtataatgtttcagaag |
38237821 |
T |
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| Q |
218 |
tgacttgcttgaatcaacaatcgaatcatc----ttaccactcatgaaggaacttcagcttaaagcaatgtgattgattaagaagcattccttaataaag |
313 |
Q |
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| T |
38237822 |
tgacttgtttgaatcaacaatcgaatcatcttaattaccactcatgaaggaacttcagc-taaagcaatgtgattgattaagaagcattccttaataaag |
38237920 |
T |
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| Q |
314 |
gcatatagaacttgttattgacaataaaat |
343 |
Q |
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| T |
38237921 |
gcatatagaacttgttattgacaataaaat |
38237950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 38254077 - 38254257
Alignment:
| Q |
18 |
ctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatca---------tg |
108 |
Q |
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| T |
38254077 |
ctaacaaagctttgagtttcctatcaaattcagtttctgtctta-gcttctagtaatggtctagttgttggtcacatcattaatgatcatgatccgattg |
38254175 |
T |
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| Q |
109 |
agtttgtagtatgtaatccagttataaagttctggtc-ttcaattccaacccctgagtcatttcgaagaaaccatagttttg |
189 |
Q |
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| T |
38254176 |
agtttgtaatatgtaatccagttactaagtcctggtctttcacttcctactcctgagtcatttcaaagaaaccatagttttg |
38254257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 38248960 - 38249050
Alignment:
| Q |
18 |
ctaacgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatcatga |
109 |
Q |
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| T |
38248960 |
ctaacaaagctttgagttttctatcaaattcaatttgtgtctta-gcttctagtaatggtctagttgttggtcacaccattaatgatcatga |
38249050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 193 - 343
Target Start/End: Original strand, 37069866 - 37070012
Alignment:
| Q |
193 |
gatatggagtataatgtttcagaagtgacttgcttgaatcaacaatcgaatcatcttaccactcatgaaggaacttcagcttaaagcaatgtgattgatt |
292 |
Q |
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| T |
37069866 |
gatatggagtataatgtttcagaagtgacttacttgaatcaacaattgaatcatcttaccactcatgaaggaacttcaac-taaagcaatgtgattgcat |
37069964 |
T |
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| Q |
293 |
aagaagcattccttaataaaggcatatagaacttgttattgacaataaaat |
343 |
Q |
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| T |
37069965 |
aagaagcattcct---taaaggcatatagaacttgttattgacaataaaat |
37070012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 20656606 - 20656785
Alignment:
| Q |
21 |
acgaagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatca---------tgagt |
111 |
Q |
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|||| |||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20656606 |
acgatgctttgagtttcctatcaaattcagtttgtgtctta-gcttctagtaatggtctagttgttggtcacaccattaatgatcatgatttgattgagt |
20656704 |
T |
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| Q |
112 |
ttgtagtatgtaatccagttataaagttctggtcttcaattccaacccctgagtcatttcgaagaaaccatagttttgctg |
192 |
Q |
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| T |
20656705 |
ttggaaaatgtaatccagttacaaagtcttggtcttcacttcccacccgttagtcatttcaaagaaaccatagttttgctg |
20656785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 192
Target Start/End: Complemental strand, 20656460 - 20656321
Alignment:
| Q |
62 |
agcttctagtaatggtctagttgttggtcacaccattaatgatcatgagt---------ttgtagtatgtaatccagttataaagttctggtcttcaatt |
152 |
Q |
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| T |
20656460 |
agcttatagtaatgatctagttgttggtcacaccattaatgatcatgattcgattgaaattgtaatatgtaatccagttacaaagtcctggtcttcactt |
20656361 |
T |
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| Q |
153 |
ccaacccctgagtcatttcgaagaaaccatagttttgctg |
192 |
Q |
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| T |
20656360 |
cctacccctgagtcatttcaaagaaatcatagttttgctg |
20656321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 12036337 - 12036252
Alignment:
| Q |
107 |
tgagtttgtagtatgtaatccagttataaagttctggtcttcaattccaacccctgagtcatttcgaagaaaccatagttttgctg |
192 |
Q |
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| T |
12036337 |
tgagtttgtaatatgtaattcagttacaaagtcctggtcttcacttcctaccccggagtcatttcaaagaaaccatagttttgctg |
12036252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 12036383 - 12036430
Alignment:
| Q |
62 |
agcttctagtaatggtctagttgttggtcacaccattaatgatcatga |
109 |
Q |
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| T |
12036383 |
agcttgtagtaatgatctagttgttggtcacaccattaacgatcatga |
12036430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 22177031 - 22177207
Alignment:
| Q |
24 |
aagctttgagtttcctatcaaattcaatttgtgtctcaagcttctagtaatggtctagttgttggtcacaccattaatgatcatga---------gtttg |
114 |
Q |
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|||||||||| ||||||||||||||| ||||||||| | | |||||||||||||||||||||||| |||||| ||||| |||||| ||||| |
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| T |
22177031 |
aagctttgagattcctatcaaattcagtttgtgtcttagg-ttctagtaatggtctagttgttggg-acaccactaatggtcatgattggattgagtttg |
22177128 |
T |
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| Q |
115 |
tagtatgtaatccagttataaagttctggtcttcaattccaacccctgagtcatttcgaagaaaccatagttttgctgg |
193 |
Q |
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|| ||||||||| ||||| ||||| |||||||||| |||| || ||||||||||||| |||||| |||||||||||||| |
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| T |
22177129 |
taatatgtaatctagttacaaagtcctggtcttcacttcctactcctgagtcatttcaaagaaatcatagttttgctgg |
22177207 |
T |
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